PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s916311g004 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | G2-like | ||||||||
Protein Properties | Length: 237aa MW: 26024.4 Da PI: 8.9503 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 104.5 | 6.4e-33 | 45 | 99 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt++LH+rFv+a++qLGG+++AtPk +l++m+v+g+t++hvkSHLQkYRl PDK_30s916311g004 45 KQRLRWTSDLHDRFVDAITQLGGPDRATPKGVLRVMGVPGITIYHVKSHLQKYRL 99 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.423 | 42 | 102 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-31 | 43 | 100 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.66E-17 | 44 | 99 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.5E-26 | 45 | 100 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 5.5E-7 | 47 | 98 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 1.3E-23 | 131 | 177 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MYHAKKFSTV SMVPHKAQGT EQLVNAGVMG GSNVSNPTNS GGSGKQRLRW TSDLHDRFVD 60 AITQLGGPDR ATPKGVLRVM GVPGITIYHV KSHLQKYRLA KYLPESPADG SKDEKKDSAD 120 TLSSMDSASG IQINEALKMQ MEVQKRLHEQ LEVQRQLQLR IEAQGRYLEK IIDEQQKLNG 180 ALKAPGEEQN PSPSPSASQD CLGDPSSPLK KQRIADQSPD PTHEMPPPES KPHFIGQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 3e-23 | 44 | 102 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 3e-23 | 44 | 102 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 3e-23 | 44 | 102 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 3e-23 | 44 | 102 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 3e-23 | 44 | 102 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 3e-23 | 44 | 102 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 3e-23 | 44 | 102 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 3e-23 | 44 | 102 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008786820.1 | 1e-176 | myb family transcription factor PHL7-like isoform X1 | ||||
Swissprot | Q9SJW0 | 1e-77 | PHL7_ARATH; Myb family transcription factor PHL7 | ||||
TrEMBL | A0A2H3XPV3 | 1e-174 | A0A2H3XPV3_PHODC; myb family transcription factor PHL7-like isoform X1 | ||||
STRING | XP_008786820.1 | 1e-175 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7913 | 33 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01060.1 | 2e-64 | G2-like family protein |