PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s915541g002
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family HD-ZIP
Protein Properties Length: 704aa    MW: 77602.8 Da    PI: 6.9289
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s915541g002genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.57.3e-211671156
                       TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
           Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                       +++ +++t+ q+++Le++F+++++p++++r +L++ lgL+ rq+k+WFqNrR+++k
  PDK_30s915541g002 16 KKRYHRHTPRQIQQLEAVFKECPHPDEKQRMQLSRDLGLEPRQIKFWFQNRRTQMK 71
                       688999***********************************************998 PP
2START1754.6e-552184422206
                        HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EE CS
              START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....ka 79 
                        la  a++el+++++ +ep+W+k      e +n +++ ++f++ +        ++ea+r+sg+v+m+++ lv  ++d++ +W e ++    ka
  PDK_30s915541g002 218 LATNAMEELIRLVQTDEPLWMKPGrdrrEVLNLETYGRIFPKLGHqfkspdIRIEASRDSGLVFMNAVALVDLFMDSS-KWVEFFPtivtKA 308
                        67789*****************8888889999999999998866699***99************************99.************* PP

                        EEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEE CS
              START  80 etlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskv 164
                         tlev+ +g      g l lm+ e+q+lsp+vp R+  f+Ry++q ++g+w+i+dvSv+  ++++  +++ R+ +lpSg+li++++ng+skv
  PDK_30s915541g002 309 RTLEVLATGmagtrsGSLLLMYEEMQVLSPVVPtRELCFLRYCQQIEQGSWAIADVSVELSRENQ-FAPSSRSWRLPSGCLIQEMPNGYSKV 399
                        ****************************************************************9.8************************* PP

                        EEEE-EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
              START 165 twvehvdlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206
                        twveh+++++++p h l+r lv sg a+ga++w+atlqr ce+
  PDK_30s915541g002 400 TWVEHMEVEEKTPvHRLYRDLVDSGEAFGAQRWLATLQRMCER 442
                        *****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.65E-20976IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.5E-231077IPR009057Homeodomain-like
PROSITE profilePS5007117.9121373IPR001356Homeobox domain
SMARTSM003891.9E-191477IPR001356Homeobox domain
PfamPF000462.0E-181671IPR001356Homeobox domain
CDDcd000862.08E-191674No hitNo description
PROSITE patternPS0002704871IPR017970Homeobox, conserved site
PROSITE profilePS5084850.822208445IPR002913START domain
SuperFamilySSF559611.05E-34209443No hitNo description
CDDcd088751.98E-118212441No hitNo description
SMARTSM002342.5E-46217442IPR002913START domain
PfamPF018522.8E-48219442IPR002913START domain
Gene3DG3DSA:3.30.530.203.5E-9266424IPR023393START-like domain
SuperFamilySSF559611.21E-21464696No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 704 aa     Download sequence    Send to blast
MDSGDDPDAS DGQRKKKRYH RHTPRQIQQL EAVFKECPHP DEKQRMQLSR DLGLEPRQIK  60
FWFQNRRTQM KAQHERADNC SLRAENDKIR SPCLRFNVIV MFASIEFFLS EDPPRNVLVL  120
LDDLISIYHF ISMSTMLMKE QLDRVSSVAS KYLGRPITQL PPVQPVPTSS LDLSVGGFGS  180
PALGPSLDLD LLAGSSSAVP FPFPTAVSDI EKPIMANLAT NAMEELIRLV QTDEPLWMKP  240
GRDRREVLNL ETYGRIFPKL GHQFKSPDIR IEASRDSGLV FMNAVALVDL FMDSSKWVEF  300
FPTIVTKART LEVLATGMAG TRSGSLLLMY EEMQVLSPVV PTRELCFLRY CQQIEQGSWA  360
IADVSVELSR ENQFAPSSRS WRLPSGCLIQ EMPNGYSKVT WVEHMEVEEK TPVHRLYRDL  420
VDSGEAFGAQ RWLATLQRMC ERFACLMAAG ASTRDLGGVI PSHEGRRSMM KLSQRMINNF  480
CASLSASNGN RWTTLSGLND VGVRVTVHKS TNLGQPNGVV LSAATSIWLP MSSERVFSFF  540
KDEHTRAQWD VLSSGNSVQE VARIINGSHP GNCISLLRAL NASQNSMLIL QESCTDASGS  600
LVVYAPIDLP AINIVMSGED PSYIPLLPSG FTILADGRPG GGGGATTSSN PMGGSSGSLI  660
TVAFQILVSS LPSAKLNVES VTTVNNLIST TVQQIKAALN CPSG
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008789232.10.0homeobox-leucine zipper protein ROC8-like
SwissprotQ69T580.0ROC8_ORYSJ; Homeobox-leucine zipper protein ROC8
TrEMBLA0A2H3XV660.0A0A2H3XV66_PHODC; homeobox-leucine zipper protein ROC8-like
STRINGXP_008789231.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29123770
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.10.0homeodomain GLABROUS 11