PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s915331g003
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family NAC
Protein Properties Length: 311aa    MW: 35663.5 Da    PI: 7.1331
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s915331g003genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM173.65.7e-5491381128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                        +ppGfrFhPtdeel+ +yL+kkv+ + ++l +vi++vd++k+ePwdL+ k ++ +  ++ewyfFs++dkky+tg+r+nrat++g+Wkatg+d
  PDK_30s915331g003   9 VPPGFRFHPTDEELLYYYLRKKVAYEAIDL-DVIRDVDLNKLEPWDLKdKcRIGSgPQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRD 99 
                        69****************************.9***************943444443456********************************* PP

                NAM  90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                        k+++ ++++ +g++ktLvfy+grap+g+ktdW+mheyrl
  PDK_30s915331g003 100 KSIHLSNSKRIGMRKTLVFYTGRAPHGQKTDWIMHEYRL 138
                        *************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-595158IPR003441NAC domain
PROSITE profilePS5100558.3429158IPR003441NAC domain
PfamPF023652.9E-2810138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003002Biological Processregionalization
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009834Biological Processplant-type secondary cell wall biogenesis
GO:0010455Biological Processpositive regulation of cell fate commitment
GO:0048829Biological Processroot cap development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MDGNGQLTVP PGFRFHPTDE ELLYYYLRKK VAYEAIDLDV IRDVDLNKLE PWDLKDKCRI  60
GSGPQNEWYF FSHKDKKYPT GTRTNRATTA GFWKATGRDK SIHLSNSKRI GMRKTLVFYT  120
GRAPHGQKTD WIMHEYRLDD ESTEVQEDGW VVCRVFKKKN HQRGFPPEAI LEDDLLDPLR  180
ANGYVSMEQK QNFQLPCNFS FDNSMHLPQL LSSESTIPPL MSPVSMNALD LECSQNLMKL  240
TSGNGGGHLP HERFTGDWSI LDKLLASHQN LDHLIQSKCN PLSQLMDMGS SVQRFPLQHL  300
GCEADLLKFS K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-51616014167NO APICAL MERISTEM PROTEIN
1ut4_B4e-51616014167NO APICAL MERISTEM PROTEIN
1ut7_A4e-51616014167NO APICAL MERISTEM PROTEIN
1ut7_B4e-51616014167NO APICAL MERISTEM PROTEIN
3swm_A4e-51616017170NAC domain-containing protein 19
3swm_B4e-51616017170NAC domain-containing protein 19
3swm_C4e-51616017170NAC domain-containing protein 19
3swm_D4e-51616017170NAC domain-containing protein 19
3swp_A4e-51616017170NAC domain-containing protein 19
3swp_B4e-51616017170NAC domain-containing protein 19
3swp_C4e-51616017170NAC domain-containing protein 19
3swp_D4e-51616017170NAC domain-containing protein 19
4dul_A4e-51616014167NAC domain-containing protein 19
4dul_B4e-51616014167NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator. Together with BRN1 and BRN2, regulates cellular maturation of root cap. Represses stem cell-like divisions in the root cap daughter cells, and thus promotes daughter cell fate. Inhibits expression of its positive regulator FEZ in a feedback loop for controlled switches in cell division plane. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269|PubMed:19081078, ECO:0000269|PubMed:20197506}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00250DAPTransfer from AT1G79580Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By FEZ in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008783883.10.0LOW QUALITY PROTEIN: protein SOMBRERO-like
SwissprotQ9MA171e-119SMB_ARATH; Protein SOMBRERO
TrEMBLA0A2H3XHJ00.0A0A2H3XHJ0_PHODC; LOW QUALITY PROTEIN: protein SOMBRERO-like
STRINGXP_008783883.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34613781
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79580.31e-112NAC family protein
Publications ? help Back to Top
  1. Fendrych M, et al.
    Programmed cell death controlled by ANAC033/SOMBRERO determines root cap organ size in Arabidopsis.
    Curr. Biol., 2014. 24(9): p. 931-40
    [PMID:24726156]
  2. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]
  3. Karve R,Suárez-Román F,Iyer-Pascuzzi AS
    The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release.
    Plant Physiol., 2016. 171(3): p. 2101-11
    [PMID:27221617]
  4. Kamiya M, et al.
    Control of root cap maturation and cell detachment by BEARSKIN transcription factors in Arabidopsis.
    Development, 2016. 143(21): p. 4063-4072
    [PMID:27803060]