PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s914011g002

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

FAR1

Protein Properties

Length: 664aa MW: 75427.6 Da PI: 9.7371

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s914011g002	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	89.5	4.8e-28	96	184	2	89
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 fY +YA+++GF+ r+s+ +skr+++i++r++vCs+eg+r++++ + + +++r+r+ tr+gC+a+++vkk+++gkw+v+k+e+ HnH l PDK_30s914011g002 96 FYIAYATQMGFKARVSSFIRSKRDKTIISRQLVCSREGFRSTKDANnEGRTKRPRMITRVGCRAMIMVKKQSSGKWVVSKFEKIHNHVL 184 9*************************************99998846688899*******************************87 PP
2	FAR1	96.5	3.1e-30	255	345	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fY+eYA++vGF+ r+s+ ++skr+++i++r vCskeg+r++++++ +e+ +r+ra+tr+gCka+++vkk+++gkw v+kl+++HnH+lap PDK_30s914011g002 255 FYKEYARRVGFRARVSSYYRSKRDNSIISRLIVCSKEGFRAKKDESaEERLQRPRAVTRVGCKAMIMVKKRDSGKWIVSKLVKHHNHALAP 345 9**************************************9999856667889********************************986 PP
3	FAR1	86.5	4e-27	394	482	2	89
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 fY +Y+++vGF++r+s+ ++skr+++i++r fvCskeg+ +++ + k +r+r+ tr+gCka+l+vkk++ gkw v+k+e++HnH+l PDK_30s914011g002 394 FYFAYSRRVGFNMRVSTYYRSKRDKSIISRLFVCSKEGFYVKKDVGsDGKIKRPREATRVGCKAMLMVKKNNCGKWIVSKFEKDHNHSL 482 9************************************88777654788999********************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.7E-26	96	184	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	4.0E-28	255	345	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	5.0E-25	394	482	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 664 aa Download sequence Send to blast
MVCRTGRYGP DRYATGTDRY ATGSDRYATG SDWYGPVRHR YGTDFVPVRA ATVDVEPRIG 60 DVEDMIDNSV ARDLFEPILE PYEGMEFDSE EAAKAFYIAY ATQMGFKARV SSFIRSKRDK 120 TIISRQLVCS REGFRSTKDA NNEGRTKRPR MITRVGCRAM IMVKKQSSGK WVVSKFEKIH 180 NHVLGTQGKV VMLDYDPYVR ENDEVIENPS GNETNAHGGF VGNANEIVVV PPEGDPHLEP 240 CVGMEFESEQ EAQVFYKEYA RRVGFRARVS SYYRSKRDNS IISRLIVCSK EGFRAKKDES 300 AEERLQRPRA VTRVGCKAMI MVKKRDSGKW IVSKLVKHHN HALAPRTALD DECSEAEDDE 360 MVKIERVLVA HEGEAITEPY EGMEFESEEA AKLFYFAYSR RVGFNMRVST YYRSKRDKSI 420 ISRLFVCSKE GFYVKKDVGS DGKIKRPREA TRVGCKAMLM VKKNNCGKWI VSKFEKDHNH 480 SLGSLRKLRK LQKRKHSSGN SKKKNQIELN HADRESPTLR YNNLCREAMK YAEAGAASPD 540 VYNVAMRALQ EAVKKVAAIK RNSGVVPRLG TDVCGGNLED NNNQYCEVES SVHLNQQSRT 600 RTHTSNSPSK ASYERPSRKL RLCNACKLPS DHTSRSCPTK QVYVETVGNI ALVELLKNFK 660 TAYH

Sequence ? help Back to Top

Protein Sequence Length: 664 aa Download sequence Send to blast

MVCRTGRYGP DRYATGTDRY ATGSDRYATG SDWYGPVRHR YGTDFVPVRA ATVDVEPRIG  60
DVEDMIDNSV ARDLFEPILE PYEGMEFDSE EAAKAFYIAY ATQMGFKARV SSFIRSKRDK  120
TIISRQLVCS REGFRSTKDA NNEGRTKRPR MITRVGCRAM IMVKKQSSGK WVVSKFEKIH  180
NHVLGTQGKV VMLDYDPYVR ENDEVIENPS GNETNAHGGF VGNANEIVVV PPEGDPHLEP  240
CVGMEFESEQ EAQVFYKEYA RRVGFRARVS SYYRSKRDNS IISRLIVCSK EGFRAKKDES  300
AEERLQRPRA VTRVGCKAMI MVKKRDSGKW IVSKLVKHHN HALAPRTALD DECSEAEDDE  360
MVKIERVLVA HEGEAITEPY EGMEFESEEA AKLFYFAYSR RVGFNMRVST YYRSKRDKSI  420
ISRLFVCSKE GFYVKKDVGS DGKIKRPREA TRVGCKAMLM VKKNNCGKWI VSKFEKDHNH  480
SLGSLRKLRK LQKRKHSSGN SKKKNQIELN HADRESPTLR YNNLCREAMK YAEAGAASPD  540
VYNVAMRALQ EAVKKVAAIK RNSGVVPRLG TDVCGGNLED NNNQYCEVES SVHLNQQSRT  600
RTHTSNSPSK ASYERPSRKL RLCNACKLPS DHTSRSCPTK QVYVETVGNI ALVELLKNFK  660
TAYH

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_029119796.1	0.0	uncharacterized protein LOC105043030
TrEMBL	A0A426YV00	0.0	A0A426YV00_ENSVE; Uncharacterized protein
STRING	GSMUA_Achr2P10090_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9031	33	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06250.1	2e-47	FAR1-related sequence 7