PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s913781g002 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | MYB | ||||||||
Protein Properties | Length: 333aa MW: 37398.8 Da PI: 8.2 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57 | 4.6e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +lv +++++G+g+Wk+I+ g+ R+ k+c++rw +yl PDK_30s913781g002 14 KGPWTPEEDIILVTYIQEHGPGNWKSIPTNTGLMRCSKSCRLRWTNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 43.4 | 8e-14 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+ E ++++ ++lG++ W++Ia++++ Rt++++k++w+++l PDK_30s913781g002 67 RGNFTPHEAGMIINLQAMLGNR-WAAIASYLP-QRTDNDIKNYWNSHL 112 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.3E-23 | 6 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 25.699 | 9 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.25E-30 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.2E-14 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.1E-16 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.26E-12 | 16 | 61 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.3E-23 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.7E-12 | 66 | 114 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 17.741 | 66 | 116 | IPR017930 | Myb domain |
Pfam | PF00249 | 6.1E-12 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.82E-8 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 333 aa Download sequence Send to blast |
MGRPPFCDKV GIKKGPWTPE EDIILVTYIQ EHGPGNWKSI PTNTGLMRCS KSCRLRWTNY 60 LRPGIKRGNF TPHEAGMIIN LQAMLGNRWA AIASYLPQRT DNDIKNYWNS HLKKKIRKYP 120 TTANSYMTPS NLTITCNELI SNGYSSETGN SGISTIHSPL LRSNHSTSTY AWSTENISRL 180 LERWTRSSPK ANLKPDRGEQ YQSVHAFNDS SSNATNQPYV KKEELKSNQE RGDPISQAYI 240 KNDGECCGSI PHKELVSLFS FENSSGNAWE KSFVDSTSYK PQSTLADAEN NQRLDSQQHI 300 PLSLLEKWLL DEATGQADLV ELSAGCCSEA MPQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 5e-25 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the regulation of gene (e.g. drought-regulated and flavonoid biosynthetic genes) expression and stomatal movements leading to negative regulation of responses to drought and responses to other physiological stimuli (e.g. light). {ECO:0000269|PubMed:22018045}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by abscisic acid (ABA) and osmotic stress (salt stress). {ECO:0000269|PubMed:22018045}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010931465.1 | 0.0 | transcription factor MYB60 | ||||
Swissprot | B3VTV7 | 2e-98 | MYB60_VITVI; Transcription factor MYB60 | ||||
TrEMBL | A0A2H3Y2N1 | 1e-166 | A0A2H3Y2N1_PHODC; myb-related protein 306 | ||||
STRING | XP_008792495.1 | 1e-167 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP229 | 38 | 296 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08810.1 | 4e-87 | myb domain protein 60 |
Publications ? help Back to Top | |||
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