PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s913781g002
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family MYB
Protein Properties Length: 333aa    MW: 37398.8 Da    PI: 8.2
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s913781g002genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding574.6e-181461148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g+WT+eEd +lv +++++G+g+Wk+I+   g+ R+ k+c++rw +yl
  PDK_30s913781g002 14 KGPWTPEEDIILVTYIQEHGPGNWKSIPTNTGLMRCSKSCRLRWTNYL 61
                       79********************************************97 PP

2Myb_DNA-binding43.48e-1467112148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        rg++T+ E   ++++ ++lG++ W++Ia++++  Rt++++k++w+++l
  PDK_30s913781g002  67 RGNFTPHEAGMIINLQAMLGNR-WAAIASYLP-QRTDNDIKNYWNSHL 112
                        89********************.*********.************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-23664IPR009057Homeodomain-like
PROSITE profilePS5129425.699965IPR017930Myb domain
SuperFamilySSF466891.25E-3011108IPR009057Homeodomain-like
SMARTSM007173.2E-141363IPR001005SANT/Myb domain
PfamPF002492.1E-161461IPR001005SANT/Myb domain
CDDcd001674.26E-121661No hitNo description
Gene3DG3DSA:1.10.10.601.3E-2365116IPR009057Homeodomain-like
SMARTSM007172.7E-1266114IPR001005SANT/Myb domain
PROSITE profilePS5129417.74166116IPR017930Myb domain
PfamPF002496.1E-1267112IPR001005SANT/Myb domain
CDDcd001673.82E-869112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MGRPPFCDKV GIKKGPWTPE EDIILVTYIQ EHGPGNWKSI PTNTGLMRCS KSCRLRWTNY  60
LRPGIKRGNF TPHEAGMIIN LQAMLGNRWA AIASYLPQRT DNDIKNYWNS HLKKKIRKYP  120
TTANSYMTPS NLTITCNELI SNGYSSETGN SGISTIHSPL LRSNHSTSTY AWSTENISRL  180
LERWTRSSPK ANLKPDRGEQ YQSVHAFNDS SSNATNQPYV KKEELKSNQE RGDPISQAYI  240
KNDGECCGSI PHKELVSLFS FENSSGNAWE KSFVDSTSYK PQSTLADAEN NQRLDSQQHI  300
PLSLLEKWLL DEATGQADLV ELSAGCCSEA MPQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C5e-251211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of gene (e.g. drought-regulated and flavonoid biosynthetic genes) expression and stomatal movements leading to negative regulation of responses to drought and responses to other physiological stimuli (e.g. light). {ECO:0000269|PubMed:22018045}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by abscisic acid (ABA) and osmotic stress (salt stress). {ECO:0000269|PubMed:22018045}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010931465.10.0transcription factor MYB60
SwissprotB3VTV72e-98MYB60_VITVI; Transcription factor MYB60
TrEMBLA0A2H3Y2N11e-166A0A2H3Y2N1_PHODC; myb-related protein 306
STRINGXP_008792495.11e-167(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22938296
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08810.14e-87myb domain protein 60
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]