PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s912251g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family HD-ZIP
Protein Properties Length: 281aa    MW: 31870.6 Da    PI: 6.4071
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s912251g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox53.54.1e-1783135456
                        -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
           Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                        + +++ eq+++Le+ Fe+ + +  e++ +LA+ lgL+ rq+ +WFqNrRa++k
  PDK_30s912251g001  83 KKRLNLEQVRTLERNFEMGSRLEPERKMQLARVLGLQPRQIAIWFQNRRARWK 135
                        4568889*********************************************9 PP
2HD-ZIP_I/II125.32.8e-4081171191
        HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                        ekk+rl+ eqv++LE++Fe+ ++LeperK++lar Lglqprq+a+WFqnrRAR+ktkqlEkdy++Lkr+++a+k+en++L++++++L++e+
  PDK_30s912251g001  81 EKKKRLNLEQVRTLERNFEMGSRLEPERKMQLARVLGLQPRQIAIWFQNRRARWKTKQLEKDYDSLKRQFEAVKAENDALKAHNRKLQAEI 171
                        69**************************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.34E-1875139IPR009057Homeodomain-like
PROSITE profilePS5007116.82777137IPR001356Homeobox domain
SMARTSM003899.0E-1680141IPR001356Homeobox domain
CDDcd000864.70E-1582138No hitNo description
PfamPF000461.9E-1483135IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.606.4E-1885145IPR009057Homeodomain-like
PRINTSPR000312.5E-5108117IPR000047Helix-turn-helix motif
PROSITE patternPS000270112135IPR017970Homeobox, conserved site
PRINTSPR000312.5E-5117133IPR000047Helix-turn-helix motif
PfamPF021836.8E-16137177IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MFNNQITCNG TPASFPTNFL LPHEESHQPP TLSPLLPTNP QDFRGAATML GKRSMSFAGV  60
EACEEMNAED ELSDDCSQVG EKKKRLNLEQ VRTLERNFEM GSRLEPERKM QLARVLGLQP  120
RQIAIWFQNR RARWKTKQLE KDYDSLKRQF EAVKAENDAL KAHNRKLQAE ILALKGREGT  180
EPINLNKETE GSCSNKSENS TDVNLGISRT QATDGPSNPQ ESRSFLAYRS PGAAHLLQSS  240
SKAETQGPKM EHGIQEENFN MFCSIEDQTA FWSWSEQHNF H
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1129137RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269|PubMed:11292072}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008784419.10.0homeobox-leucine zipper protein ATHB-13-like
SwissprotQ8LC039e-95ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13
TrEMBLA0A2H3XIS10.0A0A2H3XIS1_PHODC; homeobox-leucine zipper protein ATHB-13-like
STRINGXP_008784419.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22893894
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.12e-90HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ribone PA,Capella M,Chan RL
    Functional characterization of the homeodomain leucine zipper I transcription factor AtHB13 reveals a crucial role in Arabidopsis development.
    J. Exp. Bot., 2015. 66(19): p. 5929-43
    [PMID:26136262]
  3. Wang X, et al.
    Overexpressed BRH1, a RING finger gene, alters rosette leaf shape in Arabidopsis thaliana.
    Sci China Life Sci, 2018. 61(1): p. 79-87
    [PMID:28887625]
  4. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]