PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s912081g003 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | MYB_related | ||||||||
Protein Properties | Length: 242aa MW: 27532.2 Da PI: 7.1159 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.1 | 1.7e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEd +l+ ++k +G g+W++ +++ g++R++k+c++rw++yl PDK_30s912081g003 14 RGAWTAEEDRILKSYIKDHGEGRWRSLPKKAGLKRCGKSCRLRWLNYL 61 89********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 24.908 | 9 | 65 | IPR017930 | Myb domain |
SMART | SM00717 | 9.9E-15 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.89E-21 | 15 | 88 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.0E-25 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.95E-11 | 16 | 61 | No hit | No description |
PROSITE profile | PS50090 | 4.24 | 62 | 112 | IPR017877 | Myb-like domain |
SMART | SM00717 | 71 | 66 | 114 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.3E-8 | 69 | 105 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MGRKPCCSGE DLNRGAWTAE EDRILKSYIK DHGEGRWRSL PKKAGLKRCG KSCRLRWLNY 60 LRPDIKRGNI TDEEEDLIIR LHNLLGNRKK VQGQHQLKRC EASINEAPQN YLVRTKAIRC 120 SKRFITPQQH ITQKQERNAA IEPAMIGELA TEHSSVTPKE DTWWDVLQGL DTSKASPSEA 180 ADFDSMQLCG SESPCNHHTR REDYLKGVFE EMSDAALPDV ELELKSLANF LGCEEGWLAG 240 EI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 3e-13 | 11 | 88 | 24 | 100 | MYB TRANSFORMING PROTEIN |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008784297.1 | 1e-175 | transcription factor TT2-like isoform X2 | ||||
TrEMBL | A0A2H3XIG8 | 1e-173 | A0A2H3XIG8_PHODC; transcription factor TT2-like isoform X2 | ||||
STRING | XP_008784296.1 | 1e-173 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP116 | 37 | 448 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22640.1 | 1e-42 | myb domain protein 3 |