PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s911131g003

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

FAR1

Protein Properties

Length: 833aa MW: 95499.4 Da PI: 7.2944

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s911131g003	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	76.9	4e-24	76	163	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYneYA+++GFs+rk+++++s ++gei+ r+fvC+keg+ + + + ++++ r+ rtgC+a++ +k+ k+gk++v++++ eHnH+la PDK_30s911131g003 76 QFYNEYARRIGFSIRKQNMTRS-KSGEIKLRRFVCYKEGYYKGSPFD-KDAKFLRTDVRTGCNAHIGIKRLKNGKFCVHRFQPEHNHKLA 163 6*****************99.7888************9999.99999*********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.7E-21	76	163	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.3E-27	284	378	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.188	563	599	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	4.5E-7	572	599	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.5E-8	574	601	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 833 aa Download sequence Send to blast
MDNTEQAGDA GEAKDTENEH RRDVGGKVDD QNQVENADAP HDGNGKEKEQ SPNDIPKEDF 60 EPKVGMLFDS DEQAYQFYNE YARRIGFSIR KQNMTRSKSG EIKLRRFVCY KEGYYKGSPF 120 DKDAKFLRTD VRTGCNAHIG IKRLKNGKFC VHRFQPEHNH KLASSKKVHL LRSQREWNDS 180 QRSRAHATTA GVNSKSTSDL LFNTSEGHKM LPCTPSGFQN YLHGLRQHEM KLGDAGAITH 240 YLQKKAAEDQ QFYSAIQLDM KDQITNVFWT DARSKIDYEH FGDVVCFDTS YKINDYGRPF 300 AQFTGVNNHK QIVIFGAALL YDDTMETFRW LFTAFQEAMN GQAPRVILTD EDAAFIKAIQ 360 EVWPNTTYRL CVWLVYQNAV KNLNHVFQSS PSFETDFSRC VYDCEYEDEF ISAWQKMLEE 420 YNLTENAWLS KMYEDRKKWA VVYGREIFCT DMKSTQRTEH INGVIKTCLN PDKDLLSFFK 480 RYERLVEDRH YNELEADFHA IQSTPEVPLS RLLKQAASIY TPKIYEMFMK EFQLYVDCVI 540 KNCGDEGTAS VYEVTNVEKQ RTTYVRYDLS NDTVSCSCKK FEFVGILCSH ALKVLDHKNI 600 KEIPEKYILK RWRKDVKVGL SINYYDGSSE IDPTVAIASR YTSLGHVYGQ IMAKGSKCQE 660 AYAVAIEEAE KLMKKLDLAL QNRAHDTLSS ESSDDQVENI IVGNKEIRTF VNQKATSFKK 720 DKERRRCRVR SALDRSTEKK ARKGLSTDAA VASGTGAPIT IDSQLAASSN QYQQWPPARY 780 LSLQFPTMGG QEPLVSSSPQ PPFCITNQAY QNESACIMYS QSQVLQSRHI SGS

Sequence ? help Back to Top

Protein Sequence Length: 833 aa Download sequence Send to blast

MDNTEQAGDA GEAKDTENEH RRDVGGKVDD QNQVENADAP HDGNGKEKEQ SPNDIPKEDF  60
EPKVGMLFDS DEQAYQFYNE YARRIGFSIR KQNMTRSKSG EIKLRRFVCY KEGYYKGSPF  120
DKDAKFLRTD VRTGCNAHIG IKRLKNGKFC VHRFQPEHNH KLASSKKVHL LRSQREWNDS  180
QRSRAHATTA GVNSKSTSDL LFNTSEGHKM LPCTPSGFQN YLHGLRQHEM KLGDAGAITH  240
YLQKKAAEDQ QFYSAIQLDM KDQITNVFWT DARSKIDYEH FGDVVCFDTS YKINDYGRPF  300
AQFTGVNNHK QIVIFGAALL YDDTMETFRW LFTAFQEAMN GQAPRVILTD EDAAFIKAIQ  360
EVWPNTTYRL CVWLVYQNAV KNLNHVFQSS PSFETDFSRC VYDCEYEDEF ISAWQKMLEE  420
YNLTENAWLS KMYEDRKKWA VVYGREIFCT DMKSTQRTEH INGVIKTCLN PDKDLLSFFK  480
RYERLVEDRH YNELEADFHA IQSTPEVPLS RLLKQAASIY TPKIYEMFMK EFQLYVDCVI  540
KNCGDEGTAS VYEVTNVEKQ RTTYVRYDLS NDTVSCSCKK FEFVGILCSH ALKVLDHKNI  600
KEIPEKYILK RWRKDVKVGL SINYYDGSSE IDPTVAIASR YTSLGHVYGQ IMAKGSKCQE  660
AYAVAIEEAE KLMKKLDLAL QNRAHDTLSS ESSDDQVENI IVGNKEIRTF VNQKATSFKK  720
DKERRRCRVR SALDRSTEKK ARKGLSTDAA VASGTGAPIT IDSQLAASSN QYQQWPPARY  780
LSLQFPTMGG QEPLVSSSPQ PPFCITNQAY QNESACIMYS QSQVLQSRHI SGS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008786389.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_008786391.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_017697702.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A2H3XNU4	0.0	A0A2H3XNU4_PHODC; protein FAR1-RELATED SEQUENCE 5-like
STRING	XP_008786389.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-121	FAR1-related sequence 5