PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s909501g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family bHLH
Protein Properties Length: 423aa    MW: 47165.2 Da    PI: 5.0198
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s909501g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.63.4e-11226272455
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         h ++Er+RR+++ + f  L  ++P +     kK +Ka+ L  Av+Y+k+L+
  PDK_30s909501g001 226 DHVIAERKRREKLSQQFIALSAIIPGL-----KKTDKASLLGDAVDYLKQLE 272
                        6999***********************.....9*****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.9222271IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.5E-9226272IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.6E-15226282IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.55E-10227274No hitNo description
SuperFamilySSF474593.4E-14227281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-12228277IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
LEDQDFAGRG WRGESLLLNS DREREQERSH GYTGPQPYEE GEENVSHDLK EEKLLHVRLK  60
KDLFVCHRGS ITRMEPSPVP WPSEAEDSTF ICLSEMSSLD HFDAQEIIGS LGEDFEYPLS  120
LENHSSFSAF DSPGITEFNA SFKCSSMEAS ERPINAFKAE GVSGAVPNAS SASFISFGDV  180
ESAHDPLQPW PRTESFYSHD STSNETTLDF QRPERNGMVS RPTSQDHVIA ERKRREKLSQ  240
QFIALSAIIP GLKKTDKASL LGDAVDYLKQ LEEKAKTLEE QAVKKSAAEP IIFVKKSLHI  300
SNTNGSSPGE AVQKIEASLE GKAVLMSIHC EKKKGVLVKV LSEIEKLHLG VINMGVVPFI  360
DSSLNITVTA QKGNKIMMNA WPWPSRMCAI LLEEFMGRKI EEGFSMTEKD LVKELNSALS  420
QWL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1230235ERKRRE
2231236RKRREK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026659279.10.0transcription factor bHLH18-like
TrEMBLA0A3Q0HXN60.0A0A3Q0HXN6_PHODC; transcription factor bHLH18-like
STRINGXP_008785755.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42133572
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.14e-39bHLH family protein