PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s909461g005
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family M-type_MADS
Protein Properties Length: 300aa    MW: 34100.1 Da    PI: 6.9959
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s909461g005genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF89.22.2e-28958150
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
             SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                       krien++nrqvtfskRrng++KKA+ELSvLCd+++a+i+fs++g+l  +s
  PDK_30s909461g005  9 KRIENNTNRQVTFSKRRNGLIKKAYELSVLCDIDIALIMFSPSGRLSHFS 58
                       79********************************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.5E-38160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.899161IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.14E-30282IPR002100Transcription factor, MADS-box
CDDcd002651.14E-36275No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-26323IPR002100Transcription factor, MADS-box
PfamPF003195.2E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-263859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MGRVKLQIKR IENNTNRQVT FSKRRNGLIK KAYELSVLCD IDIALIMFSP SGRLSHFSGR  60
QRIEDVLGRY INLPEHDRGG IIQNREYLIR TLKKLKCEGD MEAELVKYVT FPPYKKTCPG  120
AVNFHVEVHN LSFCFPIELQ QEIHMYQHQL QLSEERLSIF EPDPLGITSM DELESCEKFL  180
MEALRRAGER KMYLPSQQEP MPNSFGSEVV QWVPGTTPNP GNQIFIGSDL LMSLRDPGIY  240
GPISSGTGLP MDPRVGSCHV SNQNDAWHQA YTSTELLSAL IPSAPFPLIQ VQSHQTVRID
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A1e-17199195MEF2 CHIMERA
6bz1_B1e-17199195MEF2 CHIMERA
6bz1_C1e-17199195MEF2 CHIMERA
6bz1_D1e-17199195MEF2 CHIMERA
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026660735.10.0agamous-like MADS-box protein AGL66 isoform X2
TrEMBLA0A3Q0I5210.0A0A3Q0I521_PHODC; agamous-like MADS-box protein AGL66 isoform X2
STRINGXP_008790798.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP49533360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77980.12e-72AGAMOUS-like 66