PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s906611g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family MYB
Protein Properties Length: 316aa    MW: 34555.5 Da    PI: 6.3083
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s906611g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.91.3e-142572148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g W++eEd++l+ +    G g+W+ +ar  g+ R++k+c++rw +yl
  PDK_30s906611g001 25 KGLWSPEEDDKLISYMLSNGQGCWSDVARNAGLQRCGKSCRLRWINYL 72
                       678*******************************************97 PP
2Myb_DNA-binding49.11.3e-1578121146
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        rg+++++E+e +++++  lG++ W+ Ia++++ gRt++++k++w++
  PDK_30s906611g001  78 RGAFSPQEEEVIIHLHSILGNR-WSQIAARLP-GRTDNEIKNFWNS 121
                        89********************.*********.***********95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.6652072IPR017930Myb domain
SuperFamilySSF466891.09E-2723119IPR009057Homeodomain-like
SMARTSM007173.6E-112474IPR001005SANT/Myb domain
PfamPF002491.9E-132572IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-222679IPR009057Homeodomain-like
CDDcd001674.85E-92872No hitNo description
PROSITE profilePS5129424.93573127IPR017930Myb domain
SMARTSM007172.2E-1477125IPR001005SANT/Myb domain
PfamPF002494.7E-1478121IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-2580128IPR009057Homeodomain-like
CDDcd001671.55E-1080120No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MRKPDPPAKN NLSNNNSNGA TKLKKGLWSP EEDDKLISYM LSNGQGCWSD VARNAGLQRC  60
GKSCRLRWIN YLRPDLKRGA FSPQEEEVII HLHSILGNRW SQIAARLPGR TDNEIKNFWN  120
SAIKKRLKNS SSSSPNHSGS PEPKVGMGGL TALNDHEVKT MCMDSASSSS SSTMQGLSIR  180
NQYDLLPLPD VSCGMTGLGT SYFHEPTSFP QVGFGDGNYG SHGMMMGGGL MGGGCELFVP  240
ALESTSTEEN GATRNTTRNI SDPCHSHNNG VNKINGDAAV GNEIYWEGGN IRMEEWDLDD  300
LMKDVSSFPF LDFQAE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-27191271108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as molecular switch in the NAC012/SND1-mediated transcriptional network regulating secondary wall biosynthesis. Is directly activated by NAC012/SND1 and its close homologs, including NAC043/NST1, NAC066/NST2, NAC101/VND6 and NAC030/VND7. Is required for functional expression of a number of secondary wall-associated transcription factors and secondary wall biosynthetic genes involved in cellulose, xylan and lignin synthesis. Functions redundantly with MYB46 in the transcriptional regulatory cascade leading to secondary wall formation in fibers and vessels (PubMed:19808805). Transcription activator that binds to the DNA consensus sequence 5'-ACC[AT]A[AC][TC]-3', designated as the secondary wall MYB-responsive element (SMRE). Regulates directly numerous transcription factors and a number of genes involved in secondary wall biosynthesis that contain SMRE elements in their promoters (PubMed:22197883). {ECO:0000269|PubMed:19808805, ECO:0000269|PubMed:22197883}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008801940.10.0transcription factor MYB83
SwissprotQ9C6U19e-78MYB83_ARATH; Transcription factor MYB83
TrEMBLA0A2H3YPJ00.0A0A2H3YPJ0_PHODC; transcription factor MYB83
STRINGXP_008801940.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP98213545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08500.13e-75myb domain protein 83
Publications ? help Back to Top
  1. Vargas L, et al.
    Improving total saccharification yield of Arabidopsis plants by vessel-specific complementation of caffeoyl shikimate esterase (cse) mutants.
    Biotechnol Biofuels, 2016. 9: p. 139
    [PMID:27390589]
  2. Piya S,Kihm C,Rice JH,Baum TJ,Hewezi T
    Cooperative Regulatory Functions of miR858 and MYB83 during Cyst Nematode Parasitism.
    Plant Physiol., 2017. 174(3): p. 1897-1912
    [PMID:28512179]