PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s906281g001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | TCP | ||||||||
Protein Properties | Length: 337aa MW: 38049.6 Da PI: 8.8456 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 126.6 | 2.6e-39 | 132 | 275 | 2 | 133 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..............ssssaseceaesss 79 + +kdrhski T++g+RdRR+Rls e+a +fF Lqd LGfdk+s+t++WLl+q+k ai++l + ss sec s PDK_30s906281g001 132 PLRKDRHSKIFTAQGLRDRRMRLSQEVASKFFNLQDLLGFDKASQTVDWLLTQSKSAIQQLIDAsqlennsinlssfvRESSTSEC--FSAI 221 579*************************************************************6666666555544433333444..3444 PP TCP 80 ssasnsssgkaaksaakskksqksaasalnlakesrakarararertrekmrik 133 s+++++s+++++k++ + ++ + a+ + l ke rakarararertrek+ri PDK_30s906281g001 222 SNDKQKSAAASSKAKDIGLQPLSIATLDRTLTKEMRAKARARARERTREKKRIP 275 44444444455555558888888888899*********************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 32.189 | 134 | 192 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 3.7E-39 | 134 | 273 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51370 | 11.613 | 254 | 271 | IPR017888 | CYC/TB1, R domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048831 | Biological Process | regulation of shoot system development |
Sequence ? help Back to Top |
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Protein Sequence Length: 337 aa Download sequence Send to blast |
YWYPRHQYED SYGHVFSPTS IIRWVNLGTS NGISTIFHQM LPNPSPQYLA ESYFVGDEDQ 60 DNSPSIPKDC YPSFFSFPLS PPNFDHELLT AHLTTTHNLE PPTLSIPDPA VDMDTTTNVP 120 PTTRSSSRRK RPLRKDRHSK IFTAQGLRDR RMRLSQEVAS KFFNLQDLLG FDKASQTVDW 180 LLTQSKSAIQ QLIDASQLEN NSINLSSFVR ESSTSECFSA ISNDKQKSAA ASSKAKDIGL 240 QPLSIATLDR TLTKEMRAKA RARARERTRE KKRIPSGRHE DSCKEDQPSS KTTDAVKEAV 300 CINGVDQLSP VTMVPSRLVY NNNNTISLLD EQHKFPK |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00215 | DAP | Transfer from AT1G67260 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008803033.1 | 1e-162 | transcription factor CYCLOIDEA-like | ||||
TrEMBL | A0A2H3YSZ6 | 1e-160 | A0A2H3YSZ6_PHODC; transcription factor CYCLOIDEA-like | ||||
STRING | XP_008803033.1 | 1e-161 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4052 | 31 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67260.2 | 2e-23 | TCP family protein |