PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s905941g001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | TCP | ||||||||
Protein Properties | Length: 243aa MW: 26412.6 Da PI: 6.6332 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 107.9 | 1.6e-33 | 77 | 182 | 4 | 89 |
TCP 4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt........ssssaseceaesssssasnsss 87 ++ ++sk++T++g RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak+ai+elt++ ++++s++++++ + +a+++++ PDK_30s905941g001 77 QQEQKSKVCTAKGTRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKNAKAAIDELTELpgryptasAFNPPSASNPQETQAAAAADNQ 168 56789*********************************************************998876663333334444444444443333 PP TCP 88 g............k 89 + + PDK_30s905941g001 169 PggdsgntpipvaE 182 33334444444441 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.7E-28 | 77 | 161 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.118 | 77 | 135 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MAKPLHHEDL NPHRTGKGKE DCVPIGGIVR FGAVPAEVVL MVMGFWELDG QAFWKRRQEK 60 HQHQHQRILF PEQQQQQQEQ KSKVCTAKGT RDRRVRLSAH TAIQFYDVQD RLGYDRPSKA 120 VDWLIKNAKA AIDELTELPG RYPTASAFNP PSASNPQETQ AAAAADNQPG GDSGNTPIPV 180 AEPVASAAFG FGGGSGSASF LPPSLDSDAI ADTIKAKRST TESPTSRPLL PLLLTIDGAE 240 EEN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 6e-21 | 82 | 135 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 6e-21 | 82 | 135 | 1 | 54 | Putative transcription factor PCF6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM468863 | 3e-58 | AM468863.2 Vitis vinifera contig VV78X023076.3, whole genome shotgun sequence. | |||
GenBank | FQ381831 | 3e-58 | FQ381831.1 Vitis vinifera clone SS0ABG82YF20. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008784441.1 | 4e-74 | transcription factor PCF5-like | ||||
Refseq | XP_008784506.1 | 4e-74 | transcription factor PCF5-like | ||||
Refseq | XP_017698427.1 | 4e-74 | transcription factor PCF5-like | ||||
Refseq | XP_017698481.1 | 4e-74 | transcription factor PCF5-like | ||||
Refseq | XP_026659949.1 | 4e-74 | transcription factor PCF5-like | ||||
Swissprot | Q8LT07 | 7e-42 | PCF5_ORYSJ; Transcription factor PCF5 | ||||
TrEMBL | A0A2H3ZQR1 | 1e-72 | A0A2H3ZQR1_PHODC; transcription factor PCF5-like | ||||
STRING | XP_008784441.1 | 2e-73 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5839 | 33 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15030.3 | 7e-32 | TCP family protein |