PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s905821g001

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

C3H

Protein Properties

Length: 938aa MW: 100280 Da PI: 5.8314

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s905821g001	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.2	2.2e-06	918	938	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C+ f+++G+Ck G++C++ H+ PDK_30s905821g001 918 VCK-FHESGHCKKGASCNYLHP 938 588.*****************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55277	3.92E-16	149	209	IPR003169	GYF domain
PROSITE profile	PS50829	12.745	156	208	IPR003169	GYF domain
SMART	SM00444	1.6E-10	157	210	IPR003169	GYF domain
Gene3D	G3DSA:3.30.1490.40	2.7E-16	158	209	IPR003169	GYF domain
Pfam	PF02213	3.2E-9	159	200	IPR003169	GYF domain
PROSITE profile	PS50103	13.375	913	938	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 938 aa Download sequence Send to blast
MDPDYESAEE EEVDDKRDKY SQSRESLSRR KGRDFSSLGR GSGSNFNWNG ASKSSSGSRV 60 LSRGSLTEDA QDKSEAFSGG GNSENELSWN QGKDAQWTSS WGAPNTHAST TGQEAGIWDN 120 NQLVPKPGNT YAIAAETTSA SVPSRVSVPL NINENDKVWH YQDPAGTVQG PFSMLQLRKW 180 NKFFPPDLRI WLTTERQENY ILLTDAMKSQ NVLPQQEPQH NSYPQPTNFA GAVDDRDNRY 240 GGGWKGTHNS MLIGMQNGSN WSASQIGATL STAVNILASA GRWAPQPANL SVPKMEVVKG 300 DNAWYGQPHG QSSPRPTAPF GNPYRQPSYQ GGGGQGNAGR WNKGQDHGSA WNSDRPRGSR 360 TIGQGYESQH SNWSYLNQQS QQTFVEPWKA RPVNDSNLPA PTPQPIMRDR TSVQGSLHTS 420 ASTAASVQPI NSGWGTTPST GFGGAHHLST ANPDGVWDVP KQSEDQGSWS VASASVPSMS 480 RMADVGTAQF PERVDHLGDP QLCSQQKPSE SNAPNILVNQ SGLFPQKEET ISSNNAAVPS 540 VSGMNKNQSF QSDYPSPTPR CDRQEFSVSN DPDPAKKWPE AHDNSASKSQ GADPAPASLA 600 FEPSDPRSQL SAEVDNMQLR SRDSDEDVAD KGIKQNEQPF PEKQNKQPPL AGIEQKLVDP 660 APSIKLTAEC DVLELASDQG SEASSAPKPV SELHGWAPSP AQKLEPNGSG PQDMMGSEWS 720 LPSPTPASRF SGWDIGADST SGCGTLGQVS SNANTDQGTP AQGNTNANLG WEASAMGNLK 780 SPGMGAPIQG NSNPNTVWGA PIQGNSNPNT VWVAPAQGNP NQYSGWGAPS TGNANQNLGW 840 GAQTQQGNTD ASAGWGTGSS RSWNLPAGDP DSLGAQRKHH GDKYPRGRES GHGGGRISWD 900 GSGEASRPTP RGQGQRGVCK FHESGHCKKG ASCNYLHP

Sequence ? help Back to Top

Protein Sequence Length: 938 aa Download sequence Send to blast

MDPDYESAEE EEVDDKRDKY SQSRESLSRR KGRDFSSLGR GSGSNFNWNG ASKSSSGSRV  60
LSRGSLTEDA QDKSEAFSGG GNSENELSWN QGKDAQWTSS WGAPNTHAST TGQEAGIWDN  120
NQLVPKPGNT YAIAAETTSA SVPSRVSVPL NINENDKVWH YQDPAGTVQG PFSMLQLRKW  180
NKFFPPDLRI WLTTERQENY ILLTDAMKSQ NVLPQQEPQH NSYPQPTNFA GAVDDRDNRY  240
GGGWKGTHNS MLIGMQNGSN WSASQIGATL STAVNILASA GRWAPQPANL SVPKMEVVKG  300
DNAWYGQPHG QSSPRPTAPF GNPYRQPSYQ GGGGQGNAGR WNKGQDHGSA WNSDRPRGSR  360
TIGQGYESQH SNWSYLNQQS QQTFVEPWKA RPVNDSNLPA PTPQPIMRDR TSVQGSLHTS  420
ASTAASVQPI NSGWGTTPST GFGGAHHLST ANPDGVWDVP KQSEDQGSWS VASASVPSMS  480
RMADVGTAQF PERVDHLGDP QLCSQQKPSE SNAPNILVNQ SGLFPQKEET ISSNNAAVPS  540
VSGMNKNQSF QSDYPSPTPR CDRQEFSVSN DPDPAKKWPE AHDNSASKSQ GADPAPASLA  600
FEPSDPRSQL SAEVDNMQLR SRDSDEDVAD KGIKQNEQPF PEKQNKQPPL AGIEQKLVDP  660
APSIKLTAEC DVLELASDQG SEASSAPKPV SELHGWAPSP AQKLEPNGSG PQDMMGSEWS  720
LPSPTPASRF SGWDIGADST SGCGTLGQVS SNANTDQGTP AQGNTNANLG WEASAMGNLK  780
SPGMGAPIQG NSNPNTVWGA PIQGNSNPNT VWVAPAQGNP NQYSGWGAPS TGNANQNLGW  840
GAQTQQGNTD ASAGWGTGSS RSWNLPAGDP DSLGAQRKHH GDKYPRGRES GHGGGRISWD  900
GSGEASRPTP RGQGQRGVCK FHESGHCKKG ASCNYLHP

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008796873.1	0.0	zinc finger CCCH domain-containing protein 19-like
TrEMBL	A0A2H3YCR9	0.0	A0A2H3YCR9_PHODC; zinc finger CCCH domain-containing protein 19-like
STRING	XP_008796873.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7179	3	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16485.1	4e-16	nucleic acid binding;zinc ion binding;DNA binding