PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s904561g013
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family MYB_related
Protein Properties Length: 489aa    MW: 53270 Da    PI: 7.8308
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s904561g013genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.36.2e-173983147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                       r rWT+eE+e++++a k++G   W++I +++g ++t+ q++s+ qk+
  PDK_30s904561g013 39 RERWTEEEHEKFLEALKLYGRA-WRRIEEHIG-TKTAVQIRSHAQKF 83
                       78******************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.79E-163387IPR009057Homeodomain-like
PROSITE profilePS5129421.9173488IPR017930Myb domain
TIGRFAMsTIGR015575.5E-173786IPR006447Myb domain, plants
SMARTSM007171.7E-133886IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.2E-103979IPR009057Homeodomain-like
PfamPF002496.3E-143982IPR001005SANT/Myb domain
CDDcd001679.75E-114184No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0009845Biological Processseed germination
GO:0009909Biological Processregulation of flower development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
MCMDIGTSSV IGHQSKESSL SGDEHAIKVR KPYTITKQRE RWTEEEHEKF LEALKLYGRA  60
WRRIEEHIGT KTAVQIRSHA QKFFSKVVRE PGTAKAVEIP PPRPKRKPLH PYPRKLGNSP  120
SKGLPVMERP EWSSLPIPSA FEPENSSPVS VLSAVGSDAV GSTVSNPTHA CTSPVLSAAR  180
SDLIGTLFTE QENGCQSPTP SVEDENRSTS PGPASTCLVA EDKSQMEVDL SSKDETPKGG  240
CQIETQATSL KLFGRTVLVT DAQKPCSSSV GNTMQSCKSL PAVGSSRSVS TDVDLQTPTK  300
PVLQTPAQGN LWGGPGKSVW SAFNGGTCPM FYRLPPHGDF MNSTEAACPL PWWWAFSGTQ  360
PTLPFINPQN MNSVQIMPQT CIEASDDKDS RKEGSWTGFN TPACTASIVD KNSDDVDSKR  420
GVEHLKEPAP ALLRLKHSEN SAFVSLRVNT EKSPRGFVPY NRCLAEKQAK QHSQMANQER  480
DGQALGLCL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008804812.10.0protein REVEILLE 7-like isoform X1
TrEMBLA0A2H3YWF10.0A0A2H3YWF1_PHODC; protein REVEILLE 7-like isoform X1
STRINGXP_008804812.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP77833647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37260.16e-41MYB_related family protein