PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s899671g001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | MYB_related | ||||||||
Protein Properties | Length: 151aa MW: 16813.6 Da PI: 5.9126 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26.6 | 1.4e-08 | 1 | 24 | 24 | 48 |
HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 24 WktIartmgkgRtlkqcksrwqkyl 48 W++Ia +++ gRt++++k++w+++l PDK_30s899671g001 1 WSLIAGRLP-GRTDNEVKNYWNSHL 24 *********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00167 | 1.16E-6 | 1 | 24 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.4E-12 | 1 | 38 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.63E-7 | 1 | 34 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.177 | 1 | 28 | IPR017930 | Myb domain |
Pfam | PF00249 | 2.8E-6 | 1 | 24 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 151 aa Download sequence Send to blast |
WSLIAGRLPG RTDNEVKNYW NSHLRRKLIN MGIDPNNHHV SQTLSLHRPQ SSGNETLVGG 60 PVNHERKEWR PLISTTDNDR LSDTASCLPP KKDSASSLED NTNVLPDLNL DPTMSVPSPS 120 TTLTEWNQES AELEAPSDLG NATNHTLLLF R |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008806257.1 | 1e-105 | transcription factor MYB8-like | ||||
TrEMBL | A0A2H3YZP5 | 1e-103 | A0A2H3YZP5_PHODC; transcription factor MYB8-like | ||||
STRING | XP_008806257.1 | 1e-104 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP116 | 37 | 448 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38620.1 | 2e-19 | myb domain protein 4 |