PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s895901g001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | GRAS | ||||||||
Protein Properties | Length: 473aa MW: 52104.1 Da PI: 5.8364 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 167.9 | 8.2e-52 | 325 | 472 | 1 | 151 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 l++lL++cA+av+++d + a +lL+++++++s++gd +qRla +f+ +L+arla+++s++y++l +++t+ ++ l+a++l+ ++P+ k PDK_30s895901g001 325 LRTLLIHCAQAVAADDRRTAGELLKQIRQHSSSNGDGTQRLACCFADGLEARLAGTGSQIYHTLVAKRTT---ATDILKAYHLYLAACPFKK 413 6789*************************************************************99999...9****************** PP GRAS 93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspe 151 +sh+ aNq+Il+ +e+++rvHiiDf+i G+QWp+L+q La R++gpp+lRiTg++ p+ PDK_30s895901g001 414 VSHFFANQTILKVAEKASRVHIIDFGIYFGFQWPCLIQRLAGRAGGPPRLRITGIDVPQ 472 *******************************************************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 36.495 | 299 | 473 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.9E-49 | 325 | 472 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 473 aa Download sequence Send to blast |
MFPGTNPTNP DGNLSCGRHA SPGGDSPEDF EISSDIALNY ISRMLMEEDI DEKVSNYQEE 60 SALQAAEKPF YEILGQKYPP SPDRPPLYSQ HGLESPDENY GNSNSGSNSS GATENNSWAH 120 DFGEYQQSQA FPALLELPYQ SSLSSSSSVG NVAEALEESL ISTSRLRDLL IESLPAWQFR 180 RGVEEARKFL PSNDKLIIDL EANGVSSLPR EPRTGGGFVG VKAEEEPEYA IYGSRGRKNL 240 HREDLDLEEG RSNKQSAIYS EDTIRSEMFD LVLLCQGDKC SKKMSDLREA MQNEANRNAQ 300 SDHGRGPTGG KARGKKQTKK EVVDLRTLLI HCAQAVAADD RRTAGELLKQ IRQHSSSNGD 360 GTQRLACCFA DGLEARLAGT GSQIYHTLVA KRTTATDILK AYHLYLAACP FKKVSHFFAN 420 QTILKVAEKA SRVHIIDFGI YFGFQWPCLI QRLAGRAGGP PRLRITGIDV PQP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 6e-25 | 331 | 468 | 24 | 164 | Protein SCARECROW |
5b3h_D | 6e-25 | 331 | 468 | 24 | 164 | Protein SCARECROW |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008784606.1 | 0.0 | scarecrow-like protein 9 | ||||
Refseq | XP_008784607.1 | 0.0 | scarecrow-like protein 9 | ||||
TrEMBL | A0A2H3XJ75 | 0.0 | A0A2H3XJ75_PHODC; scarecrow-like protein 9 | ||||
STRING | XP_008784606.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1505 | 38 | 118 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37650.1 | 2e-93 | GRAS family protein |