PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s895901g001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family GRAS
Protein Properties Length: 473aa    MW: 52104.1 Da    PI: 5.8364
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s895901g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS167.98.2e-523254721151
               GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                        l++lL++cA+av+++d + a +lL+++++++s++gd +qRla +f+ +L+arla+++s++y++l +++t+    ++ l+a++l+  ++P+ k
  PDK_30s895901g001 325 LRTLLIHCAQAVAADDRRTAGELLKQIRQHSSSNGDGTQRLACCFADGLEARLAGTGSQIYHTLVAKRTT---ATDILKAYHLYLAACPFKK 413
                        6789*************************************************************99999...9****************** PP

               GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspe 151
                        +sh+ aNq+Il+ +e+++rvHiiDf+i  G+QWp+L+q La R++gpp+lRiTg++ p+
  PDK_30s895901g001 414 VSHFFANQTILKVAEKASRVHIIDFGIYFGFQWPCLIQRLAGRAGGPPRLRITGIDVPQ 472
                        *******************************************************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098536.495299473IPR005202Transcription factor GRAS
PfamPF035142.9E-49325472IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MFPGTNPTNP DGNLSCGRHA SPGGDSPEDF EISSDIALNY ISRMLMEEDI DEKVSNYQEE  60
SALQAAEKPF YEILGQKYPP SPDRPPLYSQ HGLESPDENY GNSNSGSNSS GATENNSWAH  120
DFGEYQQSQA FPALLELPYQ SSLSSSSSVG NVAEALEESL ISTSRLRDLL IESLPAWQFR  180
RGVEEARKFL PSNDKLIIDL EANGVSSLPR EPRTGGGFVG VKAEEEPEYA IYGSRGRKNL  240
HREDLDLEEG RSNKQSAIYS EDTIRSEMFD LVLLCQGDKC SKKMSDLREA MQNEANRNAQ  300
SDHGRGPTGG KARGKKQTKK EVVDLRTLLI HCAQAVAADD RRTAGELLKQ IRQHSSSNGD  360
GTQRLACCFA DGLEARLAGT GSQIYHTLVA KRTTATDILK AYHLYLAACP FKKVSHFFAN  420
QTILKVAEKA SRVHIIDFGI YFGFQWPCLI QRLAGRAGGP PRLRITGIDV PQP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A6e-2533146824164Protein SCARECROW
5b3h_D6e-2533146824164Protein SCARECROW
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008784606.10.0scarecrow-like protein 9
RefseqXP_008784607.10.0scarecrow-like protein 9
TrEMBLA0A2H3XJ750.0A0A2H3XJ75_PHODC; scarecrow-like protein 9
STRINGXP_008784606.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP150538118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.12e-93GRAS family protein