PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s894041g001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | GRF | ||||||||
Protein Properties | Length: 383aa MW: 42497.4 Da PI: 8.3799 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 79.2 | 3.8e-25 | 141 | 184 | 1 | 44 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCsr+v+ g+k+CErH+hrgr+rsrk++e PDK_30s894041g001 141 DPEPGRCRRTDGKKWRCSREVVTGQKYCERHVHRGRNRSRKHVE 184 79****************************************97 PP | |||||||
2 | QLQ | 50.7 | 5.3e-18 | 72 | 107 | 2 | 37 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +F+ aQ+q+L+ Q+l+yKy+++++ vP+eL+++i++ PDK_30s894041g001 72 YFSLAQWQELELQALIYKYMISGASVPMELILPIKR 107 7*********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 3.0E-9 | 71 | 107 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 19.745 | 72 | 107 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 1.8E-12 | 72 | 105 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 24.481 | 141 | 185 | IPR014977 | WRC domain |
Pfam | PF08879 | 3.9E-21 | 142 | 184 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 383 aa Download sequence Send to blast |
MESHQWRTQQ QSDRQDEHSA KIPKLQLGDQ QQPPASALHL FAAERKTTTT HTCPLFSSPI 60 SAPTAVPKAG GYFSLAQWQE LELQALIYKY MISGASVPME LILPIKRSLL DATPYYHHHH 120 HYQHFQQPML QTGYWGRYVV DPEPGRCRRT DGKKWRCSRE VVTGQKYCER HVHRGRNRSR 180 KHVEIPTATA INGLKTTLPL PSAKTTETHF SLSDSSTALD ILPLIQRPPD AKTVDGSLLE 240 SYCGSCFSPE FHDDKPDGHV LRRFFDDWPR SQQELITDTS NNARPAASTT HLSISNPGNL 300 SSDFSLKLST GNDDKPGPGS NRDNGYGRVQ PPPPNWSSWG NHGEASMGGP LAEALRSSTS 360 TPSPTSVLQK PNGSISETSS IST |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_026661641.1 | 0.0 | growth-regulating factor 3 | ||||
TrEMBL | A0A3Q0I403 | 0.0 | A0A3Q0I403_PHODC; growth-regulating factor 3 | ||||
STRING | XP_008793976.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP25461 | 4 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G52910.1 | 1e-55 | growth-regulating factor 4 |