PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s893951g001

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

S1Fa-like

Protein Properties

Length: 428aa MW: 48270.7 Da PI: 10.1997

Description

S1Fa-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s893951g001	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	S1FA	122.9	1.1e-38	361	428	4	70
S1FA 4 akvea.kGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70 +++ea kGlnPGl+vllvvggl+l flvgny+ly ya k+lPP+kkkPvskkklkre+lkqGv++PGe PDK_30s893951g001 361 VREEAtKGLNPGLVVLLVVGGLVLFFLVGNYALYRYAEKTLPPKKKKPVSKKKLKRERLKQGVSAPGE 428 456666*************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04689	1.9E-36	364	428	IPR006779	DNA binding protein S1FA

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 428 aa Download sequence Send to blast
MGSWRGVARP LPTGPRSTPG PGPPSTGTSG RGSRPQAGWP PPPSTLSGRR HLSPPTLLGR 60 GGRSYGPPPS AVLFECFQLS DKGHIIYIKP QIARDPELRH FESKRNTRWK QKSKIQWIRK 120 GDRNTRFFHQ SMIIRRQRNR IRAVRRADGQ IIEDLDAIRW VFEQFFRTRW TDQVRSESPQ 180 VMQPPVAKVS KEENAALIRP ISTEEIQDAF WSLAEDKAPG LDGFSLVFFR RWAVGDGRSI 240 GVLEDSWILE QLFCRVPTLV DSARLEGCKV SDLIIPDGSR WNELLIREVF EEQLAESILV 300 LLLPTRETTN RYFLELDGLD AIAKLLHFLV HIISVCPHDM ATAICCSETS SCGDPIEENL 360 VREEATKGLN PGLVVLLVVG GLVLFFLVGN YALYRYAEKT LPPKKKKPVS KKKLKRERLK 420 QGVSAPGE

Sequence ? help Back to Top

Protein Sequence Length: 428 aa Download sequence Send to blast

MGSWRGVARP LPTGPRSTPG PGPPSTGTSG RGSRPQAGWP PPPSTLSGRR HLSPPTLLGR  60
GGRSYGPPPS AVLFECFQLS DKGHIIYIKP QIARDPELRH FESKRNTRWK QKSKIQWIRK  120
GDRNTRFFHQ SMIIRRQRNR IRAVRRADGQ IIEDLDAIRW VFEQFFRTRW TDQVRSESPQ  180
VMQPPVAKVS KEENAALIRP ISTEEIQDAF WSLAEDKAPG LDGFSLVFFR RWAVGDGRSI  240
GVLEDSWILE QLFCRVPTLV DSARLEGCKV SDLIIPDGSR WNELLIREVF EEQLAESILV  300
LLLPTRETTN RYFLELDGLD AIAKLLHFLV HIISVCPHDM ATAICCSETS SCGDPIEENL  360
VREEATKGLN PGLVVLLVVG GLVLFFLVGN YALYRYAEKT LPPKKKKPVS KKKLKRERLK  420
QGVSAPGE

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008801646.1	2e-35	uncharacterized protein LOC103715697
TrEMBL	A0A2H3YPD9	4e-34	A0A2H3YPD9_PHODC; uncharacterized protein LOC103715697
STRING	XP_008801646.1	8e-35	(Phoenix dactylifera)