PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s893541g001

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

FAR1

Protein Properties

Length: 302aa MW: 33857.8 Da PI: 9.6299

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s893541g001	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	24.4	9.8e-08	86	136	2	52
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..teker 52 +Y++Y++++GF+ ++ + k+s+ n+ ++++f Csk ++ + + + +r PDK_30s893541g001 86 YYSTYGEKMGFKAQMGSGKRSRGNRILIMQRFLCSKGSYPPYGSAAdsA--AR 136 8***********************************9998887776331..22 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.5E-5	86	139	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 302 aa Download sequence Send to blast
MVRISEITED AANKEGEPRE GDGEPEEEEK TEQRLQEERD ETKERTREPA ESNPAELATP 60 PAEDPNEETP QPAGKVLSND YALRAYYSTY GEKMGFKAQM GSGKRSRGNR ILIMQRFLCS 120 KGSYPPYGSA ADSAARKRKR GPYKKRAQKD AEEAKKDGEV VEVIQVESLS EKPGAVGNEH 180 GGEAQGDRPK KRTFLAERDL MPKEPAREIN SVKDSAGVDK GQDGGKVPLV SNPAQSKLLR 240 DLGIRVSRYT HEERRDIVRK YMQKKSNRQA VDRSIKIPSR QALAERRQRG VGGKFLSKEE 300 MQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	134	140	ARKRKRG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_026666304.1	1e-146	protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBL	A0A3Q0IH99	1e-145	A0A3Q0IH99_PHODC; protein FAR-RED IMPAIRED RESPONSE 1-like
STRING	XP_008811123.1	1e-145	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP14833	13	18