PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s890781g001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | GeBP | ||||||||
Protein Properties | Length: 308aa MW: 33805.9 Da PI: 4.884 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 103 | 2.5e-32 | 22 | 119 | 4 | 97 |
DUF573 4 qrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqkifel 91 rlw +eDei++L+G+++f++++g+ +++ d+ fye +kk+++++++k+ql+eK+rrLKkK+++ v + ++ gk+++f+++h+q i+++ PDK_30s890781g001 22 VRLWPDEDEITILKGFLEFTSRRGTtfASHQyDTGPFYEEIKKQLQLEFTKNQLIEKLRRLKKKYRNVVGRmRSMGKDFAFKSPHEQAIYDI 113 59**********************99877778**************************************97889***************** PP DUF573 92 skkiWg 97 ++ iW PDK_30s890781g001 114 ARNIWS 119 *****6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 1.3E-30 | 23 | 119 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 308 aa Download sequence Send to blast |
MPSAEEEEER AVFDDDDDDD DVRLWPDEDE ITILKGFLEF TSRRGTTFAS HQYDTGPFYE 60 EIKKQLQLEF TKNQLIEKLR RLKKKYRNVV GRMRSMGKDF AFKSPHEQAI YDIARNIWSA 120 NVKRARDSDD DDLNTPNNAY TIEATSVADG ATNSDRRMSR SRRRSRRGAA EEAAAPTVGV 180 PVENSVPATE VPSSEAASVP GIIEETVKSC LSPLFKELIY SATGGPLGSG LSGGAALLGL 240 GLGGVGAALS PLPLSLSGSP ASLPASGTIV DEKWKKQHIL ELEVYLKRIE LLRDQIKSTL 300 EELKSSGS |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_026657246.1 | 0.0 | probable transcription factor At3g04930 | ||||
TrEMBL | A0A3Q0HRM1 | 0.0 | A0A3Q0HRM1_PHODC; probable transcription factor At3g04930 | ||||
STRING | XP_008778158.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP974 | 37 | 123 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G28040.1 | 9e-44 | DNA-binding storekeeper protein-related transcriptional regulator |