PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s890681g003
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family MYB
Protein Properties Length: 292aa    MW: 32509.3 Da    PI: 8.2219
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s890681g003genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.91.5e-103077247
                       SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                       g+WT+e  +l+ da ++  g+   +W+++a++++ g++  +++s++ ++
  PDK_30s890681g003 30 GSWTQEQNKLFEDALARIDGDnpdRWEKVAAMIP-GKSVRDIISHYKDL 77
                       89********************************.***********875 PP
2Myb_DNA-binding46.11.2e-14140184347
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        +W++eE++l++ + +++G+g+W+ I+r++   Rt+ q+ s+ qky
  PDK_30s890681g003 140 PWSEEEHKLFLLGLQKYGKGDWRNISRHFVVSRTPTQVASHAQKY 184
                        8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512937.8032780IPR017884SANT domain
SMARTSM007172.5E-72880IPR001005SANT/Myb domain
SuperFamilySSF466891.44E-103084IPR009057Homeodomain-like
PfamPF002492.5E-83077IPR001005SANT/Myb domain
CDDcd001673.05E-63177No hitNo description
PROSITE profilePS5129418.294133189IPR017930Myb domain
SuperFamilySSF466894.02E-17135189IPR009057Homeodomain-like
TIGRFAMsTIGR015571.9E-17136187IPR006447Myb domain, plants
SMARTSM007178.1E-13137187IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-12137183IPR009057Homeodomain-like
CDDcd001674.36E-11140185No hitNo description
PfamPF002491.8E-12140184IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MSSNSWMEVL PPTSPCFSSS SWFLGHKRSG SWTQEQNKLF EDALARIDGD NPDRWEKVAA  60
MIPGKSVRDI ISHYKDLEDD VSDIEAGRIP FPGYSCSPSS FTLDWANRHG YCEGLRPAYC  120
VAGGRRSGGR PDQERKKGVP WSEEEHKLFL LGLQKYGKGD WRNISRHFVV SRTPTQVASH  180
AQKYFIRLNS GGKDKRRSSI HDITTVDFPN NTPPSPPVLS TQSSSAATAG VPDLFSEMLD  240
STQPNDAFNS SANGNQFMQP PSSYGIKLQP QNTLQDPPLG SCRMLFQMHP RG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-13321041183RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010905362.10.0transcription factor DIVARICATA
SwissprotQ8S9H76e-93DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A2H3XL351e-148A0A2H3XL35_PHODC; transcription factor DIVARICATA isoform X1
STRINGXP_008785419.11e-149(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22743796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58900.18e-90Homeodomain-like transcriptional regulator
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]