PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s890091g001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | TCP | ||||||||
Protein Properties | Length: 349aa MW: 39567.5 Da PI: 9.1306 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 89.5 | 7.4e-28 | 72 | 145 | 3 | 74 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..e 74 g+kdrhsk+ T +g+RdRRvRls+++a+++++Lqd+LG+ ++sk ++WLl++++++i +l+ ++ +++ + PDK_30s890091g001 72 GGKDRHSKVRTIRGLRDRRVRLSVPTAIQLYELQDKLGLNQPSKVVDWLLNASQHEINKLPPLQMPPEYFIqfP 145 78*************************************************************88888655321 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 6.9E-27 | 73 | 179 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 28.651 | 73 | 131 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 349 aa Download sequence Send to blast |
MRKSLPYAGN SQLQLSECLQ SDESITMIRN SREEELLTKQ GGGNNDDRFP MSSRLWSELR 60 NPRIVRVSRT FGGKDRHSKV RTIRGLRDRR VRLSVPTAIQ LYELQDKLGL NQPSKVVDWL 120 LNASQHEINK LPPLQMPPEY FIQFPQSMAI SHKLAPPEAP SFLPIRDSTE FIYYDRARHL 180 ASSSTVANGD MLDNNTGENV MMLQKSAFWS SDVLMKNREK EAMKEPSTEK GSMIKGNDVG 240 SDGLQNNAIY PSYHHWNPPN AHLSHLVSHL SREEGLHNYQ PGSMFATYLN APTDFAKQYN 300 HLDMANSASK FLPSNSLRTS LQSTGDPSLK VLHPNSGFKH HYPQDHQEG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 7e-17 | 78 | 132 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 7e-17 | 78 | 132 | 1 | 55 | Putative transcription factor PCF6 |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00008 | PBM | Transfer from 496250 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008791353.2 | 0.0 | transcription factor TCP13-like | ||||
TrEMBL | A0A2H3XZZ9 | 0.0 | A0A2H3XZZ9_PHODC; transcription factor TCP13-like | ||||
STRING | XP_008791353.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2490 | 35 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60970.1 | 2e-41 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5 |