PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s889841g001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | NAC | ||||||||
Protein Properties | Length: 130aa MW: 15432.8 Da PI: 9.0484 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 171.4 | 2.9e-53 | 6 | 125 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGfrFhPtd+elv +yLk+kveg k+el evi+ +d+yk+ePw+Lp + ew+fF+ rd+ky++g+r+nrat+sgyWkatg+d++v PDK_30s889841g001 6 LPPGFRFHPTDDELVGYYLKRKVEGLKIEL-EVIPVIDLYKFEPWELP------DMEWFFFCLRDRKYPNGSRTNRATESGYWKATGRDRKV 90 79****************************.99**************9......579*********************************** PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ ++++ gl+ktLvfy+grap ge+tdWvmheyrl PDK_30s889841g001 91 VC-ESSVHGLRKTLVFYRGRAPGGERTDWVMHEYRL 125 **.9999***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.71E-56 | 3 | 128 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 53.463 | 6 | 130 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.6E-30 | 7 | 125 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 130 aa Download sequence Send to blast |
MSPMSLPPGF RFHPTDDELV GYYLKRKVEG LKIELEVIPV IDLYKFEPWE LPDMEWFFFC 60 LRDRKYPNGS RTNRATESGY WKATGRDRKV VCESSVHGLR KTLVFYRGRA PGGERTDWVM 120 HEYRLLHAFL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 3e-50 | 4 | 125 | 13 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in tissue reunion of wounded inflorescence stems. Required for the division of pith cells in the reunion process, which is dependent on polar-transported auxin and the wound-inducible hormones ethylene and jasmonate (PubMed:21911380). Binds to the promoters of XTH19 and XTH20 to induce their expression via auxin signaling. XTH19 and XTH20 are involved in cell proliferation in the tissue reunion process of incised stems (PubMed:25182467). Involved in hypocotyl graft union formation. Required for the auxin- mediated promotion of vascular tissue proliferation during hypocotyl graft attachment (PubMed:27986917). {ECO:0000269|PubMed:21911380, ECO:0000269|PubMed:25182467, ECO:0000269|PubMed:27986917}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by wounding in the flowering stem. {ECO:0000269|PubMed:21911380}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008786297.1 | 5e-86 | NAC domain-containing protein 71 | ||||
Swissprot | O49697 | 4e-67 | NAC71_ARATH; NAC domain-containing protein 71 | ||||
TrEMBL | A0A2H3XNM0 | 1e-84 | A0A2H3XNM0_PHODC; NAC domain-containing protein 71 | ||||
STRING | XP_008786297.1 | 2e-85 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6209 | 38 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17980.1 | 1e-69 | NAC domain containing protein 71 |
Publications ? help Back to Top | |||
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