PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s889281g001

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

GRF

Protein Properties

Length: 554aa MW: 59972.5 Da PI: 7.8519

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s889281g001	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	77.3	1.6e-24	192	236	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e PDK_30s889281g001 192 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKPVEG 236 79****************************************985 PP
2	QLQ	55.4	1.8e-19	122	158	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT+ Q+++L++Q+l+yKy++an+P+P Ll i++ PDK_30s889281g001 122 GPFTPLQWMELEQQALIYKYMNANAPIPTSLLISIRR 158 59******************************99975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	7.6E-11	122	158	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	21.91	123	158	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	3.2E-14	123	156	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	25.663	192	236	IPR014977	WRC domain
Pfam	PF08879	6.4E-21	193	235	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009624	Biological Process	response to nematode
GO:0048364	Biological Process	root development
GO:0048366	Biological Process	leaf development
GO:0061062	Biological Process	regulation of nematode larval development
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 554 aa Download sequence Send to blast
MDGLVGASFL CGGVFFSPRA SSDPESNKQN GFLRSGLVKE GRPCGPEEHD WRCLKVARTE 60 APSLFPDAQQ MLSFSSSKPD AFLFSSEPLS SVPLASSYVG NAGLVSGSLD VKMHGVLAGV 120 KGPFTPLQWM ELEQQALIYK YMNANAPIPT SLLISIRRSL SSSRFTSFSA GSLGPNTFGW 180 GSFHLGFSGN ADPEPGRCRR TDGKKWRCSR DAVADQKYCE RHMNRGRHRS RKPVEGQTGR 240 AAKVMPINAT TPAAPAVSGS GSPNNFTMAQ QQKNNVKANI TYSSPTQFDR VLANNELNNS 300 HDLSMLNSVN SEPTETLFPI ADQHNPFAEL PSRANYGLIS DSPFKLPSNS YLGNDNLVSS 360 VEFNDQDSPA NTFRHFIDDW HKKHSDSSTI IRTESEMQSD KTQLSISIPV ASSDFSSSSS 420 SPTHEKHTPS SLKLSLDFDP DNTHVGVGGH PNDGNQRQAS WLPTSWGSSM GGPLGEALAN 480 TCLDHNKNFS SLKLVTNGWD SSPQLKSSQT GVLQKFSFGS LCSTTRSSPV AEKHNLQDRI 540 GSSNLVNPST ITSS

Sequence ? help Back to Top

Protein Sequence Length: 554 aa Download sequence Send to blast

MDGLVGASFL CGGVFFSPRA SSDPESNKQN GFLRSGLVKE GRPCGPEEHD WRCLKVARTE  60
APSLFPDAQQ MLSFSSSKPD AFLFSSEPLS SVPLASSYVG NAGLVSGSLD VKMHGVLAGV  120
KGPFTPLQWM ELEQQALIYK YMNANAPIPT SLLISIRRSL SSSRFTSFSA GSLGPNTFGW  180
GSFHLGFSGN ADPEPGRCRR TDGKKWRCSR DAVADQKYCE RHMNRGRHRS RKPVEGQTGR  240
AAKVMPINAT TPAAPAVSGS GSPNNFTMAQ QQKNNVKANI TYSSPTQFDR VLANNELNNS  300
HDLSMLNSVN SEPTETLFPI ADQHNPFAEL PSRANYGLIS DSPFKLPSNS YLGNDNLVSS  360
VEFNDQDSPA NTFRHFIDDW HKKHSDSSTI IRTESEMQSD KTQLSISIPV ASSDFSSSSS  420
SPTHEKHTPS SLKLSLDFDP DNTHVGVGGH PNDGNQRQAS WLPTSWGSSM GGPLGEALAN  480
TCLDHNKNFS SLKLVTNGWD SSPQLKSSQT GVLQKFSFGS LCSTTRSSPV AEKHNLQDRI  540
GSSNLVNPST ITSS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008798914.1	0.0	growth-regulating factor 6-like
Swissprot	Q6AWY3	1e-111	GRF6_ORYSJ; Growth-regulating factor 6
TrEMBL	A0A2H3YHL3	0.0	A0A2H3YHL3_PHODC; growth-regulating factor 6-like
STRING	XP_008798914.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4290	35	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22840.1	1e-67	growth-regulating factor 1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Liu H, et al. OsmiR396d-regulated OsGRFs function in floral organogenesis in rice through binding to their targets OsJMJ706 and OsCR4. Plant Physiol., 2014. 165(1): p. 160-74 [PMID:24596329] Gao F, et al. Blocking miR396 increases rice yield by shaping inflorescence architecture. Nat Plants, 2015. 2: p. 15196 [PMID:27250748]