PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PDK_30s889151g005 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
|
||||||||
Family | CAMTA | ||||||||
Protein Properties | Length: 342aa MW: 39971.5 Da PI: 6.8725 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 175.9 | 5.4e-55 | 35 | 149 | 4 | 117 |
CG-1 4 e.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptf 94 ++rwlk++e++ iL+n+e++ l++e+++rp+sgsl+L+nr+++r+frkDG+ w++k+dg+tv E+he+LKvg+v+vl+cyYah+e+np f PDK_30s889151g005 35 DaHTRWLKPSEVLFILQNYERFPLSQEPAQRPPSGSLFLFNRRILRFFRKDGHMWRRKRDGRTVGEAHERLKVGNVDVLNCYYAHGEQNPYF 126 4489**************************************************************************************** PP CG-1 95 qrrcywlLeeelekivlvhylev 117 qrr+yw+L+ ++++ivlvhy+ev PDK_30s889151g005 127 QRRSYWMLDPAYDHIVLVHYREV 149 *********************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 78.319 | 29 | 155 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 2.4E-73 | 32 | 150 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 1.2E-48 | 36 | 148 | IPR005559 | CG-1 DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 342 aa Download sequence Send to blast |
MWYFTNLWRN RNKNNNNAEQ ALRLCVYDIN VLQQDAHTRW LKPSEVLFIL QNYERFPLSQ 60 EPAQRPPSGS LFLFNRRILR FFRKDGHMWR RKRDGRTVGE AHERLKVGNV DVLNCYYAHG 120 EQNPYFQRRS YWMLDPAYDH IVLVHYREVA EGRYVSGSIS NLSTESCSTF NQSTSVSNAQ 180 FRGFMSGTNG LYEPYRSSCS PGSVEEVSSK FVIENLESDR INKMDKSLSD GQSSRPEVSQ 240 ALRKLAVQLS LDDDDNSIFF DDLPVYTDRN ENLQDQDFGT RDSLQESREN LLHGLEFTGQ 300 GQLEEARKQK NYNSIQSLKT FGICSFNYSN WRMVIIDFLN IY |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008807442.1 | 0.0 | calmodulin-binding transcription activator 4-like | ||||
TrEMBL | A0A2H3Z2H7 | 0.0 | A0A2H3Z2H7_PHODC; calmodulin-binding transcription activator 4-like | ||||
STRING | XP_008807442.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP15485 | 8 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G67310.1 | 8e-55 | Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains |