PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s886601g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family MYB
Protein Properties Length: 319aa    MW: 35272.6 Da    PI: 7.3693
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s886601g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding491.4e-151462148
                       TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                       rg+W +eEd +l+ +++q+G+g +W + + ++g++R++k+c++rw++yl
  PDK_30s886601g001 14 RGPWAPEEDAKLKAYIEQHGTGgNWIALPPKIGLNRCGKSCRLRWLNYL 62
                       89*********************************************97 PP
2Myb_DNA-binding37.74.6e-1269111246
                        SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        g +++eEd ++  +    G++ W+ Ia+ ++ gRt++++k++w++
  PDK_30s886601g001  69 GGFSEEEDHIICSLYISIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                        569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.927962IPR017930Myb domain
SuperFamilySSF466896.27E-2611109IPR009057Homeodomain-like
SMARTSM007171.1E-111364IPR001005SANT/Myb domain
PfamPF002494.9E-141462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.5E-241569IPR009057Homeodomain-like
CDDcd001671.08E-81662No hitNo description
PROSITE profilePS5129421.40163117IPR017930Myb domain
SMARTSM007171.0E-967115IPR001005SANT/Myb domain
PfamPF002491.1E-1069111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.3E-2370117IPR009057Homeodomain-like
CDDcd001673.46E-771113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MGRAPCCDKA NVKRGPWAPE EDAKLKAYIE QHGTGGNWIA LPPKIGLNRC GKSCRLRWLN  60
YLRPNIKHGG FSEEEDHIIC SLYISIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLLGK  120
QRKDHQKQAR RGGGPKQEGK SDESGNLGVI GEGGSRSTYW PEPAMPVYST SRPDHHVHDD  180
PASTNRLLLM PGGRSSNDSN PSHQSPFIPP SPVPLPQLYD DSAGLMNPLV SNTSISEALQ  240
GPHRFADEID EIFHFNPVKL EGLDCFYGAG GIVDEHHGNT TSESMNWSAV GPLIYPNAVT  300
SYQGMQQCLF EEPVHLGMQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-24141177108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008796974.10.0transcription factor MYB13-like
TrEMBLA0A2H3YDD60.0A0A2H3YDD6_PHODC; transcription factor MYB13-like
STRINGXP_008796974.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.12e-77myb domain protein 84