PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s886601g001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | MYB | ||||||||
Protein Properties | Length: 319aa MW: 35272.6 Da PI: 7.3693 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49 | 1.4e-15 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W +eEd +l+ +++q+G+g +W + + ++g++R++k+c++rw++yl PDK_30s886601g001 14 RGPWAPEEDAKLKAYIEQHGTGgNWIALPPKIGLNRCGKSCRLRWLNYL 62 89*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 37.7 | 4.6e-12 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +++eEd ++ + G++ W+ Ia+ ++ gRt++++k++w++ PDK_30s886601g001 69 GGFSEEEDHIICSLYISIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 569******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.927 | 9 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.27E-26 | 11 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-11 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.9E-14 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.5E-24 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.08E-8 | 16 | 62 | No hit | No description |
PROSITE profile | PS51294 | 21.401 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 1.0E-9 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-10 | 69 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.3E-23 | 70 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.46E-7 | 71 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 319 aa Download sequence Send to blast |
MGRAPCCDKA NVKRGPWAPE EDAKLKAYIE QHGTGGNWIA LPPKIGLNRC GKSCRLRWLN 60 YLRPNIKHGG FSEEEDHIIC SLYISIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLLGK 120 QRKDHQKQAR RGGGPKQEGK SDESGNLGVI GEGGSRSTYW PEPAMPVYST SRPDHHVHDD 180 PASTNRLLLM PGGRSSNDSN PSHQSPFIPP SPVPLPQLYD DSAGLMNPLV SNTSISEALQ 240 GPHRFADEID EIFHFNPVKL EGLDCFYGAG GIVDEHHGNT TSESMNWSAV GPLIYPNAVT 300 SYQGMQQCLF EEPVHLGMQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 9e-24 | 14 | 117 | 7 | 108 | B-MYB |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008796974.1 | 0.0 | transcription factor MYB13-like | ||||
TrEMBL | A0A2H3YDD6 | 0.0 | A0A2H3YDD6_PHODC; transcription factor MYB13-like | ||||
STRING | XP_008796974.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP135 | 38 | 412 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49690.1 | 2e-77 | myb domain protein 84 |