PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s886402g020 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | MYB | ||||||||
Protein Properties | Length: 360aa MW: 39475.9 Da PI: 5.0307 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.4 | 1.4e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +grWT+eEde+lv++++ G g+W++ ++ g+ R++k+c++rw +yl PDK_30s886402g020 14 KGRWTAEEDEILVEYITANGEGSWRSLPKNAGLLRCGKSCRLRWKNYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 50.7 | 4.1e-16 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ ++eE+e+++++++ G++ W++Ia +++ gRt++++k++w+++l PDK_30s886402g020 67 RGNISKEEQEIIIKLHATVGNR-WSLIAGHLP-GRTDNEIKNYWNSHL 112 7899******************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.7E-22 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.559 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.4E-28 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.0E-12 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.84E-9 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 24.399 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.2E-24 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.0E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.9E-14 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.20E-10 | 71 | 112 | No hit | No description |
Pfam | PF06640 | 3.3E-4 | 130 | 241 | IPR010588 | Myb-related protein P, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009813 | Biological Process | flavonoid biosynthetic process | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 360 aa Download sequence Send to blast |
MGRAPCCEKV GLKKGRWTAE EDEILVEYIT ANGEGSWRSL PKNAGLLRCG KSCRLRWKNY 60 LRTDLKRGNI SKEEQEIIIK LHATVGNRWS LIAGHLPGRT DNEIKNYWNS HLSRRVYSFR 120 RAGGHVEAAM PVDLSKLAAG GKQRGGRLAS RSAMKTNTTN GIDRREKNEK GVVPATSSAQ 180 TQSDEGHSMV LDRDQHQASC VTFEGLNDEM VSGLLSPRPV ESGLWGANTE MEAMQVGATE 240 ESSVGWGSHE ERESGVMSSS EAREGRALVL NGNGNGGNMG LEEGRGTGVV AKGEEEVGSA 300 QVDQFLDWDL GGIEAKLWDE AGEMWPWQWD GENGELGLQR IEGCGYQEES LDGWLLSDVL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 3e-23 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor postulated to regulate the biosynthetic pathway of a flavonoid-derived pigment in certain floral tissues. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00627 | PBM | Transfer from PK06182.1 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008786362.1 | 0.0 | myb-related protein P-like | ||||
Swissprot | P27898 | 2e-74 | MYBP_MAIZE; Myb-related protein P | ||||
TrEMBL | A0A2H3XNH4 | 0.0 | A0A2H3XNH4_PHODC; myb-related protein P-like | ||||
STRING | XP_008786362.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP79 | 38 | 563 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47460.1 | 3e-73 | myb domain protein 12 |