PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s885671g003
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family SBP
Protein Properties Length: 1090aa    MW: 120274 Da    PI: 7.7357
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s885671g003genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP129.61.1e-40171248178
                        --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                        +Cqv++C+adls+ak+yhrrhkvCevhsk++ +lv +++qrfCqqCsrfh lsefDe+krsCrrrLa+hn+rrrk+q+
  PDK_30s885671g003 171 MCQVDDCRADLSNAKDYHRRHKVCEVHSKTTRALVGKQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQP 248
                        6**************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.106.5E-34165233IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.086169246IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.11E-37170250IPR004333Transcription factor, SBP-box
PfamPF031102.1E-29172245IPR004333Transcription factor, SBP-box
Gene3DG3DSA:1.25.40.201.8E-5501514IPR020683Ankyrin repeat-containing domain
CDDcd002046.16E-6877979No hitNo description
Gene3DG3DSA:1.25.40.201.8E-5880983IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.26E-5895980IPR020683Ankyrin repeat-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042742Biological Processdefense response to bacterium
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1090 aa     Download sequence    Send to blast
MEGQVGAQVA PPLFFHQPLP DQFHEAAPLG KKRDFPWQAP AFHHGQQQHQ QQQQRLMGAS  60
LLPNNNHPSG SWNPKMWDWD SLNFTAKPSA DASDVLHLGT QPAAVTAEVE QRKKGEESSS  120
ALTLGKGLEE DGENLTLKLG GVNFTAAEEP VARPNKRIRS RSPGSGGSYP MCQVDDCRAD  180
LSNAKDYHRR HKVCEVHSKT TRALVGKQMQ RFCQQCSRFH PLSEFDEGKR SCRRRLAGHN  240
RRRRKTQPED VSSRLLLPGN QENATNGNLD IASLLAILTR LQASLPPLPD RDRLIQIISK  300
INNLNAANTS SRLPTSGGID LNVSQASQQG SLEQAPKGNG NPAVPSSMNL LTVLSAALAA  360
SASEAIASLS QGSSDSSGND KTKIQCAEPA TDVNSHSKPT RTFPSAGVVR TICVGQYPIE  420
VPEQPVQEAR PSLPLQLFGP AEDDSPPKLG SAMKYLSSES SNPMEERSPS SSPPVTQKLF  480
PLHSAEESMK HVRMLNCRED NATVELSTSH GWNAPLELFK DSQRRVENGT VQNHPYQAGY  540
ASSSGSDHSP SSSNSDAQDR TGRIIFKLFD KDPSNFPGTL RAQILNWLSH SPSEMESYIR  600
PGCVVLSVYL SMPLIAWDQL EEDLLRRVTS LVQHSESDFW RNRRFLVRTS RQLVSHKDGK  660
VRQCKSWRTW SAPELTSVSP VAVVSGQETS LVLKGRNLTV PGTKIHCTYM GKYTSKVLCS  720
AYPGTIYDDS SVESFDFPGG SPKIFGRCFI EVENGFKGNS FPVIIADARI CQELRVLESE  780
FDEDVQTEDQ VQENGQPRSR EDVLHFLNEL GWLFQKTNTS STPSSPDFSF PRFKYLLTFS  840
VERDWCALIK TLLDILAERS SRSDVLSQGA LEMLLEIHLL NRAVKRKCRR MVDLLLHYSV  900
RRGNDNKSIF LFPPNLPGPG GLTPLHLAAS TEDSEGMVDA LTSDPQEIGL NCWDSVRDDS  960
GQSPYMYATM KNNHSYNSLV ARKLADTRNG QVSISVGNED VSLHKSWITG EEDRPAAQPS  1020
QAVSCARCAM AGAGWLGRTP RTRGLLARPY VHSMLAIAAV CVCVCLFFRG SPQIGSVAPF  1080
KWENLDFGPR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-30162245284squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00155DAPTransfer from AT1G20980Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008799143.10.0squamosa promoter-binding-like protein 15
RefseqXP_017699940.10.0squamosa promoter-binding-like protein 15
SwissprotA2YX040.0SPL15_ORYSI; Squamosa promoter-binding-like protein 15
SwissprotQ6Z8M80.0SPL15_ORYSJ; Squamosa promoter-binding-like protein 15
TrEMBLA0A2H3ZU480.0A0A2H3ZU48_PHODC; squamosa promoter-binding-like protein 15
STRINGXP_008799143.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54563853
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G20980.10.0squamosa promoter binding protein-like 14