PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s883981g003
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family HD-ZIP
Protein Properties Length: 595aa    MW: 65090.3 Da    PI: 6.5045
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s883981g003genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.62.1e-18965557
                       SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
           Homeobox  5 ttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                        ++t+eq+e+Le+++ ++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  PDK_30s883981g003  9 VRYTPEQVEALERVYTECPKPSSMRRQQLIRECpilaNIEPKQIKVWFQNRRCREKQ 65
                       579****************************************************97 PP
2START170.79.4e-541563632204
                        HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEE CS
              START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..gal 91 
                        +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s+++sg a+ra+g+v  +++  v+e+l+d++ W ++++  ++l vi +g  g +
  PDK_30s883981g003 156 IAEETLAEFLSKATGTAVDWVQMVGMKPGPDSIGIIAVSHNCSGVAARACGLVSLEPT-KVAEILKDRPSWYRDCRCLDVLTVIPTGngGNI 246
                        68999*****************************************************.8888888888*********************** PP

                        EEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHH CS
              START  92 qlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphw 179
                        +l++++++a+++l++ Rdf+++Ry+  l++g++vi+++S+++ +  p     s++vRae+lpSg+li+p+++g+s +++v+hvdl+++++++
  PDK_30s883981g003 247 ELIYMQTYAPTTLASaRDFWTLRYTTGLEDGSLVICERSLTPSTGGPAgppASNFVRAEMLPSGYLIRPCEGGGSMIHIVDHVDLDAWSVPE 338
                        ******************************************999998888***************************************** PP

                        HHHHHHHHHHHHHHHHHHHHTXXXX CS
              START 180 llrslvksglaegaktwvatlqrqc 204
                        +lr+l++s  + ++k++ a+l++ +
  PDK_30s883981g003 339 VLRPLYESPKILAQKMTIAALRHIR 363
                        ********************99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.532266IPR001356Homeobox domain
SMARTSM003893.0E-15470IPR001356Homeobox domain
SuperFamilySSF466892.18E-16969IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-18962IPR009057Homeodomain-like
PfamPF000464.5E-16965IPR001356Homeobox domain
CDDcd000861.39E-161067No hitNo description
CDDcd146861.12E-65998No hitNo description
Gene3DG3DSA:1.20.5.1708.9E-463112No hitNo description
PROSITE profilePS5084826.294146374IPR002913START domain
CDDcd088754.96E-71150366No hitNo description
Gene3DG3DSA:3.30.530.203.2E-24154356IPR023393START-like domain
SMARTSM002344.0E-48155365IPR002913START domain
SuperFamilySSF559615.49E-40156367No hitNo description
PfamPF018521.4E-51156363IPR002913START domain
SuperFamilySSF559616.04E-5395478No hitNo description
SuperFamilySSF559616.04E-5534592No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 595 aa     Download sequence    Send to blast
MPRGEVAYVR YTPEQVEALE RVYTECPKPS SMRRQQLIRE CPILANIEPK QIKVWFQNRR  60
CREKQRKEAS RLQTVNRKLT AMNKLLMEEN DRLQKQVSQL VYENGYMRQQ LHHASVATTD  120
TSCESVVTSG QHHHQQNPTP QHPQRDANNP AGLLAIAEET LAEFLSKATG TAVDWVQMVG  180
MKPGPDSIGI IAVSHNCSGV AARACGLVSL EPTKVAEILK DRPSWYRDCR CLDVLTVIPT  240
GNGGNIELIY MQTYAPTTLA SARDFWTLRY TTGLEDGSLV ICERSLTPST GGPAGPPASN  300
FVRAEMLPSG YLIRPCEGGG SMIHIVDHVD LDAWSVPEVL RPLYESPKIL AQKMTIAALR  360
HIRQIAQETS GEISYGGGRQ PAVLRTFSQR LSRGFNDAVN GFADDGWSLM GSDGVEDVTI  420
AINSSPDKLL GSHVNSSTMF SAMGCGILCA KASMLLQNVP PALLVRFLRE HRSEWADCGV  480
DAYSAASLRA SPYAVPGVRA SSGFLGGQVI LPLAHTIEHE EVIQSLLVKN NSMCSYEVVL  540
SRDMYLLQLC SGVDENAVGA CAQLVFAPID ESFADDAPLL PSGFRVIPLD PKTVG
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010905421.10.0homeobox-leucine zipper protein HOX32 isoform X2
SwissprotA2XK300.0HOX32_ORYSI; Homeobox-leucine zipper protein HOX32
SwissprotQ6AST10.0HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32
TrEMBLA0A2H3Y7760.0A0A2H3Y776_PHODC; homeobox-leucine zipper protein HOX32
STRINGXP_008794452.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37438197
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  3. Li YY, et al.
    Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.
    Rice (N Y), 2016. 9(1): p. 46
    [PMID:27624698]