PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s883931g004
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family ARR-B
Protein Properties Length: 437aa    MW: 48687.6 Da    PI: 5.0967
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s883931g004genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like65.31.1e-20198250255
            G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                         r+ WtpeL ++F ea++ L G+e+A+P++i elm+v+g+ ++hv SHLQkYR+
  PDK_30s883931g004 198 LRVIWTPELNRKFEEAIAYL-GIEQAIPSKIAELMNVEGIDRHHVGSHLQKYRI 250
                        699*****************.********************************7 PP
2Response_reg62.91.7e-21161211106
                        EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHH CS
       Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedaleal 90 
                        +++vdD+++++ ll+ ++ + +y +v+++ ++ +al +l ++   +Dl+l+D+emp+m+G+ellk  +++   +p+i+++  +++e + + +
  PDK_30s883931g004  16 LMLVDDDDTFLGLLEMMFLSCHY-KVTACNSPISALSILLDQPdkFDLLLTDLEMPDMNGYELLKIVKKKL-GIPVILMSIDATMEVMMKGI 105
                        599********************.***************555555*******************9997755.9******************* PP

                        HTTESEEEESS--HHH CS
       Response_reg  91 kaGakdflsKpfdpee 106
                        + Ga  fl Kp++++ 
  PDK_30s883931g004 106 REGACYFLPKPMSINL 121
                        ***********98865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521722.13E-2812130IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23004.3E-2913148No hitNo description
SMARTSM004486.8E-2214126IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011034.93615130IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.18E-2217130No hitNo description
PfamPF000725.1E-1817120IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS512949.081194253IPR017930Myb domain
SuperFamilySSF466892.33E-15194253IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.4E-21195254IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-18197251IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MDEDMIKSIF PSGLHLMLVD DDDTFLGLLE MMFLSCHYKV TACNSPISAL SILLDQPDKF  60
DLLLTDLEMP DMNGYELLKI VKKKLGIPVI LMSIDATMEV MMKGIREGAC YFLPKPMSIN  120
LVRNLWIHVI WKKFSDEKEI KRLRRESEKG KAPLVSDSRA PDDRAACKVI TIDDHGSYKA  180
KMKQVQEQED DPATPKKLRV IWTPELNRKF EEAIAYLGIE QAIPSKIAEL MNVEGIDRHH  240
VGSHLQKYRI RLRQEKERQE ACIYWNQFHC TMNPSYQAGY MLVPQAATYP TGVNVPGAGN  300
AVFGSFSGSV QPQQVGGCAQ QHYNTNCFPN TAFGATGAGM NAQTFSSNPA QNIREENTVS  360
MTEFAAFNNN FQAPGTSTPG YHAADGLAPS GLLMDSIQPL PTNMGQENPG VHEAASSSMP  420
IEDGDIEKFI EELLKED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A2e-16199253357Transcription factor LUX
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026659563.10.0two-component response regulator ARR14-like
TrEMBLA0A3Q0HY630.0A0A3Q0HY63_PHODC; two-component response regulator ARR14-like
STRINGXP_008786735.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP5077422
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.11e-55response regulator 2