PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s883821g016

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

FAR1

Protein Properties

Length: 811aa MW: 92726.5 Da PI: 6.8954

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s883821g016	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	54.5	3.9e-17	50	133	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY++YA +vGF v ++ks+ + + g + + +vC+k gk + + ++r++ +t+C+a++ vk++ dg ++ + +leHnH+++ PDK_30s883821g016 50 NFYKRYALRVGFGVAVKKSSFT-TYGLCRRLVLVCTKGGKGRASACY-----QSRPTAKTNCQAMIIVKLWGDGLLHLVEANLEHNHAVS 133 6**************99998.7888************9999.....99*******************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.0E-15	50	134	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.1E-33	236	330	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.273	523	559	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	3.2E-4	526	555	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	9.6E-4	534	561	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 811 aa Download sequence Send to blast
MDGGKAAAAP ENDDDDGDKA ELEEGRKVTG LDDRTPQVGM VFKSYEEVVN FYKRYALRVG 60 FGVAVKKSSF TTYGLCRRLV LVCTKGGKGR ASACYQSRPT AKTNCQAMII VKLWGDGLLH 120 LVEANLEHNH AVSPSTARFL RCYKKMSSGM TKDLAVRAAG HEDLLFGDKD CVNSIEGGRL 180 KLGEGDDEAI HQFFARMQTK NPNFFYLLDL DVEGHLRNVF WADSRSRAAY QYFSDVVYFD 240 TTCLKNKYDI PLALFVGVNH HGQLVLLGCG LVSDETTENY LWLFKAWLTC MRGCPPNAII 300 TDECEAIQGA VAEVFPEARH RICLWHIMKN VQQKLRDFEE YKTLKKDLKK VVYDSLRIDE 360 FEECWRDLIK RYGLEGSEWL NFLYENRQLW APVFLKNTFW AGMSIARQKE SITTFFEGCV 420 YPETSLKCFL SNYEMVLQTK YEMEAQADLD SFHKGRVFVT KLHMEEHLSK LYTLNMFKKF 480 QDELKAIVHC QVSLVKVDGP ISTFEVKECA FMEGGENAQD RHYEVFYNVD EFVVHCICGC 540 FEFRGILCRH ALSVFKLQQM YEIPAQYILQ RWTKDFKQLF ALDRYSKDVV GNNQMERYDY 600 LSMRCLQLVE VGMISEEKYQ LALKLLREVE KSLLDDNTCR DLQRRLLPFE TRSNASDENH 660 AASQLGITEA NKIPNSLPVK RRGRPPKKRK EESNTEMISS PSNQKDSLRA SSDGGQSNVF 720 QAASTASHLG SHIRTHGGVD LMEEVNPNDL SFGNHFGLQA NHQHHLGNQL QSANLLQSQF 780 GQQTVGNSSG MQWIYQQMLQ EDHAPFGRRT G

Sequence ? help Back to Top

Protein Sequence Length: 811 aa Download sequence Send to blast

MDGGKAAAAP ENDDDDGDKA ELEEGRKVTG LDDRTPQVGM VFKSYEEVVN FYKRYALRVG  60
FGVAVKKSSF TTYGLCRRLV LVCTKGGKGR ASACYQSRPT AKTNCQAMII VKLWGDGLLH  120
LVEANLEHNH AVSPSTARFL RCYKKMSSGM TKDLAVRAAG HEDLLFGDKD CVNSIEGGRL  180
KLGEGDDEAI HQFFARMQTK NPNFFYLLDL DVEGHLRNVF WADSRSRAAY QYFSDVVYFD  240
TTCLKNKYDI PLALFVGVNH HGQLVLLGCG LVSDETTENY LWLFKAWLTC MRGCPPNAII  300
TDECEAIQGA VAEVFPEARH RICLWHIMKN VQQKLRDFEE YKTLKKDLKK VVYDSLRIDE  360
FEECWRDLIK RYGLEGSEWL NFLYENRQLW APVFLKNTFW AGMSIARQKE SITTFFEGCV  420
YPETSLKCFL SNYEMVLQTK YEMEAQADLD SFHKGRVFVT KLHMEEHLSK LYTLNMFKKF  480
QDELKAIVHC QVSLVKVDGP ISTFEVKECA FMEGGENAQD RHYEVFYNVD EFVVHCICGC  540
FEFRGILCRH ALSVFKLQQM YEIPAQYILQ RWTKDFKQLF ALDRYSKDVV GNNQMERYDY  600
LSMRCLQLVE VGMISEEKYQ LALKLLREVE KSLLDDNTCR DLQRRLLPFE TRSNASDENH  660
AASQLGITEA NKIPNSLPVK RRGRPPKKRK EESNTEMISS PSNQKDSLRA SSDGGQSNVF  720
QAASTASHLG SHIRTHGGVD LMEEVNPNDL SFGNHFGLQA NHQHHLGNQL QSANLLQSQF  780
GQQTVGNSSG MQWIYQQMLQ EDHAPFGRRT G

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008788240.1	0.0	protein FAR1-RELATED SEQUENCE 6-like isoform X1
TrEMBL	A0A2H3XSP2	0.0	A0A2H3XSP2_PHODC; protein FAR1-RELATED SEQUENCE 6-like isoform X1
STRING	XP_008788240.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	1e-141	FAR1-related sequence 6