PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s883821g007

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

Nin-like

Protein Properties

Length: 771aa MW: 85754.6 Da PI: 7.7643

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s883821g007	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	79.7	3e-25	423	473	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+isl++l++y+s ++k+AAk +gvc+T+LK+iCR++GI RWP+R i++l PDK_30s883821g007 423 EKNISLSVLQQYYSETLKKAAKRIGVCPTTLKKICRRNGILRWPSRDIRKL 473 79**********************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.450.40	2.6E-6	73	154	IPR029016	GAF domain-like
SuperFamily	SSF55781	5.89E-6	76	154	IPR029016	GAF domain-like
PROSITE profile	PS51519	15.46	408	493	IPR003035	RWP-RK domain
Pfam	PF02042	4.2E-21	425	473	IPR003035	RWP-RK domain
SuperFamily	SSF54277	5.89E-21	662	755	No hit	No description
SMART	SM00666	1.0E-18	672	754	IPR000270	PB1 domain
PROSITE profile	PS51745	19.016	672	754	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	1.1E-19	673	753	No hit	No description
Pfam	PF00564	1.5E-16	674	753	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 771 aa Download sequence Send to blast
MGVSLSERLL MALSLFKESS GAGILAQVWM PVNQGDEYIL STYEQPYLLD QTLAGYREVS 60 RAYTFSAKEA PGSITGLPGR VFVSGMPEWT SNAVHYHRQE YLRVDHARHY DVRGILAVPI 120 FDLNEHSCCG VLELVTVKEK SDFDSEMDSI FQALQSLKMG QKSAFTEILD VLRAICHAHM 180 LPLALTWIPL SNNDEGMDEC TRDVAEANSI SGRKIMLCIQ ESACYVSDQQ MQGFLHACSE 240 HHLQNGQGIA GKAIQSTHAI FSPDVKSCDV HQYPLAHHAR KFGLHAAVAI RLRSTHTGND 300 DYILEFFLPI HCKGSAEQQL LLNNMSTTLQ RICRSLRTVS DTKVVRTDVT KEGPGTRQTI 360 PISAEHSQSL RDDAELNLTE LSSKFQNMET EIGRFFLRCN GGSEKTLPPK IIKHPKKKRS 420 TVEKNISLSV LQQYYSETLK KAAKRIGVCP TTLKKICRRN GILRWPSRDI RKLSHSMRTF 480 QSMIDSVPGV AGILKYDNAT GKHFTVVSSP EKQAAIASEP SRQGLPDQFV GNLEEETCLV 540 GRNQISNSGQ PQLHHHEANI ACVPPFGIGD KSKVTSSGGP SSLAKEKCCH DASSKGGLSS 600 ESLKCSIRSK SSCPMAALEE MHTEMDASER IIERSRPSYS SMTDSSSGSA SSRPSIKRSL 660 KNNMFAADFG SAIHVKATYK EETVRFKFSL SMGFHELIEV IGKRFKLHSG TFRLRYWDDE 720 EEWVILANES DLQECVEVLQ YMESQRLRLL VQDFPCATGS SASSNSLLMR P

Sequence ? help Back to Top

Protein Sequence Length: 771 aa Download sequence Send to blast

MGVSLSERLL MALSLFKESS GAGILAQVWM PVNQGDEYIL STYEQPYLLD QTLAGYREVS  60
RAYTFSAKEA PGSITGLPGR VFVSGMPEWT SNAVHYHRQE YLRVDHARHY DVRGILAVPI  120
FDLNEHSCCG VLELVTVKEK SDFDSEMDSI FQALQSLKMG QKSAFTEILD VLRAICHAHM  180
LPLALTWIPL SNNDEGMDEC TRDVAEANSI SGRKIMLCIQ ESACYVSDQQ MQGFLHACSE  240
HHLQNGQGIA GKAIQSTHAI FSPDVKSCDV HQYPLAHHAR KFGLHAAVAI RLRSTHTGND  300
DYILEFFLPI HCKGSAEQQL LLNNMSTTLQ RICRSLRTVS DTKVVRTDVT KEGPGTRQTI  360
PISAEHSQSL RDDAELNLTE LSSKFQNMET EIGRFFLRCN GGSEKTLPPK IIKHPKKKRS  420
TVEKNISLSV LQQYYSETLK KAAKRIGVCP TTLKKICRRN GILRWPSRDI RKLSHSMRTF  480
QSMIDSVPGV AGILKYDNAT GKHFTVVSSP EKQAAIASEP SRQGLPDQFV GNLEEETCLV  540
GRNQISNSGQ PQLHHHEANI ACVPPFGIGD KSKVTSSGGP SSLAKEKCCH DASSKGGLSS  600
ESLKCSIRSK SSCPMAALEE MHTEMDASER IIERSRPSYS SMTDSSSGSA SSRPSIKRSL  660
KNNMFAADFG SAIHVKATYK EETVRFKFSL SMGFHELIEV IGKRFKLHSG TFRLRYWDDE  720
EEWVILANES DLQECVEVLQ YMESQRLRLL VQDFPCATGS SASSNSLLMR P

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008788345.2	0.0	protein NLP2
Swissprot	Q0JC27	0.0	NLP2_ORYSJ; Protein NLP2
TrEMBL	A0A2H3XT01	0.0	A0A2H3XT01_PHODC; protein NLP2
STRING	XP_008788345.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3670	35	73

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59580.2	1e-169	Nin-like family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]