PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s883061g001

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

M-type_MADS

Protein Properties

Length: 90aa MW: 10358.6 Da PI: 4.9692

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s883061g001	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	50.4	2.9e-16	10	47	2	39
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevavii 39 ri++k rqv+fsk + ++KKA+EL +LCdaev ++ PDK_30s883061g001 10 RIKDKASRQVSFSKWWTSLFKKAHELAILCDAEVDLVF 47 8*********************************9874 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55455	7.46E-17	1	50	IPR002100	Transcription factor, MADS-box
SMART	SM00432	1.1E-13	1	61	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	20.002	1	46	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	8.3E-13	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.4E-15	10	48	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	8.3E-13	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	8.3E-13	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 90 aa Download sequence Send to blast
MRRGKVQLRR IKDKASRQVS FSKWWTSLFK KAHELAILCD AEVDLVFSPE VEDRTKEEVS 60 EVDEDGIKDR EAFEGAADLG DEQANVRPHN

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of flowering time under short day (SD) conditions. Functions as promoter of flowering under SD conditions, upstream of EHD1, HD3A and MADS14, but downstream of GIGANTEA (GI). May transmit a SD promotion signal from GI to EHD1. Functions independently of MADS50 to control flowering time. {ECO:0000269\|PubMed:17951465}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008806426.1	1e-17	MADS-box transcription factor 51-like isoform X1
Refseq	XP_008806427.1	1e-17	MADS-box transcription factor 51-like isoform X3
Refseq	XP_008806429.1	6e-18	MADS-box protein EJ2-like isoform X4
Refseq	XP_026665065.1	1e-17	MADS-box transcription factor 51-like isoform X2
Swissprot	Q9XJ61	2e-16	MAD51_ORYSJ; MADS-box transcription factor 51
TrEMBL	A0A2H3YZX5	3e-16	A0A2H3YZX5_PHODC; MADS-box transcription factor 51-like isoform X1
TrEMBL	A0A2H3Z038	1e-16	A0A2H3Z038_PHODC; MADS-box protein EJ2-like isoform X4
TrEMBL	A0A2H3Z0I9	2e-16	A0A2H3Z0I9_PHODC; MADS-box transcription factor 51-like isoform X3
TrEMBL	A0A3Q0IHM7	2e-16	A0A3Q0IHM7_PHODC; MADS-box transcription factor 51-like isoform X2
STRING	XP_008806426.1	5e-17	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP129	38	398

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G30260.1	5e-16	AGAMOUS-like 79

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Kim SL,Lee S,Kim HJ,Nam HG,An G OsMADS51 is a short-day flowering promoter that functions upstream of Ehd1, OsMADS14, and Hd3a. Plant Physiol., 2007. 145(4): p. 1484-94 [PMID:17951465]