PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s882641g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family TCP
Protein Properties Length: 669aa    MW: 76260.3 Da    PI: 8.4603
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s882641g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP112.17.6e-35489278
                TCP  2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.........ssssaseceaess 78
                       +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL++ ak+ai++l+++          ++s++ + ++++
  PDK_30s882641g001  4 TGRKDRHSKVCTAKGLRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKHAKAAIDDLAELprwypptatHFPSSNPSPPNQH 89
                       79**************************************************************9888877764444433322222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.4E-31469IPR005333Transcription factor, TCP
PROSITE profilePS5136933.079664IPR017887Transcription factor TCP subgroup
PfamPF142236.7E-32428568No hitNo description
SuperFamilySSF577561.7E-5629663IPR001878Zinc finger, CCHC-type
Gene3DG3DSA:4.10.60.107.1E-4643664IPR001878Zinc finger, CCHC-type
PROSITE profilePS501588.713649663IPR001878Zinc finger, CCHC-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 669 aa     Download sequence    Send to blast
MRSTGRKDRH SKVCTAKGLR DRRVRLSAHT AIQFYDVQDR LGYDRPSKAV DWLIKHAKAA  60
IDDLAELPRW YPPTATHFPS SNPSPPNQHD HLHDQPVPIE PNAEQAAYSS VATAGFVFGG  120
DGGFSGFHIP PEEHGGIADS THPQKRIHLL RPILVDVGLQ LWSSRKCLVK DTAYAPTIED  180
LPAKTVDKLL NRNVQNSFYA LSVNKPSESL SNIQVHSSLF TDVVMEFQLY LTTYADEQEQ  240
PSLFLDVDQG AAFGFVAENW SGKWDPGVTA RLRRRSSGES WRVACYGANL NLSLRKIKEQ  300
KAVEIPQDDM TRDHCNKQQC IEKHKIKLRL ISDHKWTQTT VFLHANGVNN LDEPSPSARP  360
AADLILKTWQ EQQRILAVTT TMTSIAAVGS VIILEFLFLL ENIDRGYEEP HEEALMSPAQ  420
REALPRMRKK DQQALTLIHQ CLDEAMFERV ANATIAKQAW EILQNSYQGV DKVKKVRLQM  480
LREDFEGIRM QESESIANFF SRVLAIVNQM KRYGERLEDV RVIEKILRSL HSKFDYIVVA  540
IEESKDLETM TVDQLMGSLQ AHEERINKKE EPIEQVLATK LSVKEKERKY EKSQQERGRA  600
WGQGRGRGGR GGGRGGQGNQ YSNNEERRHF SRGRGRENYT RQNDMSKVRC YNCQKIGHCA  660
WECWSSPFC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A3e-191164154Putative transcription factor PCF6
5zkt_B3e-191164154Putative transcription factor PCF6
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1606614RGGRGGGRG
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6626117e-61KM662611.1 Ananas bracteatus clone 46469a microsatellite sequence.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.35e-37TCP family protein