PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s879811g002

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

GRAS

Protein Properties

Length: 677aa MW: 76815.3 Da PI: 5.703

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s879811g002	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	397.1	1.8e-121	301	672	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 l++ L++cA+av+ +d ++a++lL+++++++sp+gd++qRla+yf+ +L+arla+++se+y++l +++ ++ l+a++l+ ++P+ k PDK_30s879811g002 301 LRTILIHCAQAVAIDDRRNAHELLKQIRQHSSPYGDATQRLAQYFADGLEARLAGTGSEIYNSLVAKRRG---AADILKAHHLYMSACPFKK 389 5789**********************************************************999998...9************** PP GRAS 93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlv 182 +sh+ Nq+Il+ +e+++rvHi+D++i +G+QWp++lq L++Rp+gpp+lRiTg+++p++g +e++eetg+rLa++++++++pfef++ + PDK_30s879811g002 390 ISHFFSNQTILDVAEKATRVHIVDYGIYYGFQWPCFLQRLSARPGGPPRLRITGIDEPQPGfrPTERIEETGRRLADYCRSFDIPFEFHA-I 480 **************************************************************************************.7 PP GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak 274 a ++e++++e+L+++++E+l+V + +q ++l+de+v ++s+r+ vL+++++++P v++++ + ++++ F++rf eal ++salfd+le++ PDK_30s879811g002 481 AAKWETVRVEDLNIDKDEVLVVTCLHQFKNLMDETVVVDSPRNMVLNTIRKMNPVVFIHAIVNGAYSAPFFVTRFREALFHFSALFDMLETN 572 99************************************************************************************** PP GRAS 275 lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrp 366 +pre+ +r+ +Er l+g+ei nv++ceg er+er et+++W+ r+ +aGF+++pl+ +++k+ak +++ + + + v+e s +l++gWk+r PDK_30s879811g002 573 VPREDAQRQLIERDLFGKEILNVISCEGLERVERPETFKQWQVRILRAGFTQLPLNRDIVKKAKEKVKMSYHKDFVVDEGSRWLLQGWKGRI 664 *******************************************************************888************** PP GRAS 367 LvsvSaWr 374 ++++S+W+ PDK_30s879811g002 665 IYALSSWK 672 *****8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	70.028	275	652	IPR005202	Transcription factor GRAS
Pfam	PF03514	6.3E-119	301	672	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 677 aa Download sequence Send to blast
MDPAEDAEIF SDIVLSYISQ MLMEEDIDEK FEHPALLAAE KPFYDILAEN SSPSSDQPPP 60 PPFSSQSSDS PDDSANNNQY GSSSGGVINN LAVDDIWPYD SLEYQQLQTH PVSVDYSSRS 120 SFYSGSVVEG LDESFGNTAA VPDLLSGSQL PAWEQFRRGA EEARKFLPSE DKFAINLEAN 180 GFSFPRELEQ ENGLVEVKAE EEEREYLSRR SRGRKNPHGD DLELEEGRSN KQSAVFPERT 240 VRTEMFDRVL LYTGDPGRGP SELRAAMQKE ASRRSQSGQS KGSGGGKGRV KRQPKREVVD 300 LRTILIHCAQ AVAIDDRRNA HELLKQIRQH SSPYGDATQR LAQYFADGLE ARLAGTGSEI 360 YNSLVAKRRG AADILKAHHL YMSACPFKKI SHFFSNQTIL DVAEKATRVH IVDYGIYYGF 420 QWPCFLQRLS ARPGGPPRLR ITGIDEPQPG FRPTERIEET GRRLADYCRS FDIPFEFHAI 480 AAKWETVRVE DLNIDKDEVL VVTCLHQFKN LMDETVVVDS PRNMVLNTIR KMNPVVFIHA 540 IVNGAYSAPF FVTRFREALF HFSALFDMLE TNVPREDAQR QLIERDLFGK EILNVISCEG 600 LERVERPETF KQWQVRILRA GFTQLPLNRD IVKKAKEKVK MSYHKDFVVD EGSRWLLQGW 660 KGRIIYALSS WKPNDAT

Sequence ? help Back to Top

Protein Sequence Length: 677 aa Download sequence Send to blast

MDPAEDAEIF SDIVLSYISQ MLMEEDIDEK FEHPALLAAE KPFYDILAEN SSPSSDQPPP  60
PPFSSQSSDS PDDSANNNQY GSSSGGVINN LAVDDIWPYD SLEYQQLQTH PVSVDYSSRS  120
SFYSGSVVEG LDESFGNTAA VPDLLSGSQL PAWEQFRRGA EEARKFLPSE DKFAINLEAN  180
GFSFPRELEQ ENGLVEVKAE EEEREYLSRR SRGRKNPHGD DLELEEGRSN KQSAVFPERT  240
VRTEMFDRVL LYTGDPGRGP SELRAAMQKE ASRRSQSGQS KGSGGGKGRV KRQPKREVVD  300
LRTILIHCAQ AVAIDDRRNA HELLKQIRQH SSPYGDATQR LAQYFADGLE ARLAGTGSEI  360
YNSLVAKRRG AADILKAHHL YMSACPFKKI SHFFSNQTIL DVAEKATRVH IVDYGIYYGF  420
QWPCFLQRLS ARPGGPPRLR ITGIDEPQPG FRPTERIEET GRRLADYCRS FDIPFEFHAI  480
AAKWETVRVE DLNIDKDEVL VVTCLHQFKN LMDETVVVDS PRNMVLNTIR KMNPVVFIHA  540
IVNGAYSAPF FVTRFREALF HFSALFDMLE TNVPREDAQR QLIERDLFGK EILNVISCEG  600
LERVERPETF KQWQVRILRA GFTQLPLNRD IVKKAKEKVK MSYHKDFVVD EGSRWLLQGW  660
KGRIIYALSS WKPNDAT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	5e-55	285	673	1	379	Protein SCARECROW
5b3h_D	5e-55	285	673	1	379	Protein SCARECROW
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008785573.1	0.0	scarecrow-like protein 9
Refseq	XP_026659271.1	0.0	scarecrow-like protein 9
TrEMBL	A0A2H3XLW7	0.0	A0A2H3XLW7_PHODC; scarecrow-like protein 9
STRING	XP_008785573.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1505	38	118

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	0.0	GRAS family protein