PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s876481g003
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family ARF
Protein Properties Length: 356aa    MW: 40035.7 Da    PI: 8.9858
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s876481g003genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B376.53e-24123224199
                        EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                        f+k lt sd++++g +++p++ ae+       ++++++ ++l+++d++ ++W++++iyr++++r++lt+GW+ Fv a++Lk+gD+v+F   +
  PDK_30s876481g003 123 FCKNLTASDTSTHGGFSVPRRAAEKLfpqldySMQPPN-QELIVRDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVGAKRLKAGDSVLFI--R 211
                        89*********************999*****9555555.49************************************************..4 PP

                        SSEE..EEEEE-S CS
                 B3  87 rsefelvvkvfrk 99 
                        +++ +l+++v+r+
  PDK_30s876481g003 212 DEKSQLLLGVRRA 224
                        5677789999997 PP

2Auxin_resp77.63.2e-26249313165
         Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvg 65 
                        aahaa+++s+F+v+YnPra++seF++++ k++ka +++vs+GmRf m+fete+ss+rr+  ++v 
  PDK_30s876481g003 249 AAHAAASRSPFTVYYNPRACPSEFIIPLGKYHKAAYTQVSIGMRFGMMFETEESSKRRCRFIIVE 313
                        79********************************************************9877765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.11E-46111252IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.1E-42116238IPR015300DNA-binding pseudobarrel domain
CDDcd100176.69E-22122223No hitNo description
PfamPF023626.7E-22123224IPR003340B3 DNA binding domain
SMARTSM010198.8E-24123225IPR003340B3 DNA binding domain
PROSITE profilePS5086312.717123225IPR003340B3 DNA binding domain
PfamPF065071.8E-22249316IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009908Biological Processflower development
GO:0009942Biological Processlongitudinal axis specification
GO:0010305Biological Processleaf vascular tissue pattern formation
GO:0048364Biological Processroot development
GO:0048507Biological Processmeristem development
GO:0005634Cellular Componentnucleus
GO:0016020Cellular Componentmembrane
GO:0042802Molecular Functionidentical protein binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MKLLGEVQSK QAARKVINSE LWHACAGPLA SLPQPGSLVY YFPQGHSEQV TASTRKAANS  60
HIPNYPNLPS QLMCQVHNVT LHADKDTDEI YAQITLQPVN SESDVFPIPD LGHTKSKHPT  120
EFFCKNLTAS DTSTHGGFSV PRRAAEKLFP QLDYSMQPPN QELIVRDLHD NVWTFRHIYR  180
GQPKRHLLTT GWSLFVGAKR LKAGDSVLFI RDEKSQLLLG VRRANRQQTA LPSSVLSADS  240
MHIGVLAAAA HAAASRSPFT VYYNPRACPS EFIIPLGKYH KAAYTQVSIG MRFGMMFETE  300
ESSKRRCRFI IVEWDEHGYG ERPDRVSLWE IETPESLFVF PTPKRQCLPG FVGKFC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A0.0133637392Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00153DAPTransfer from AT1G19850Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010934525.10.0auxin response factor 11
SwissprotQ01K260.0ARFK_ORYSI; Auxin response factor 11
SwissprotQ8S9830.0ARFK_ORYSJ; Auxin response factor 11
TrEMBLM0S1G20.0M0S1G2_MUSAM; Auxin response factor
STRINGGSMUA_Achr1P20040_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP86733241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19850.10.0ARF family protein
Publications ? help Back to Top
  1. Shen C, et al.
    Functional analysis of the structural domain of ARF proteins in rice (Oryza sativa L.).
    J. Exp. Bot., 2010. 61(14): p. 3971-81
    [PMID:20693412]
  2. Indoliya Y, et al.
    Decoding regulatory landscape of somatic embryogenesis reveals differential regulatory networks between japonica and indica rice subspecies.
    Sci Rep, 2016. 6: p. 23050
    [PMID:26973288]