PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s876481g003 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | ARF | ||||||||
Protein Properties | Length: 356aa MW: 40035.7 Da PI: 8.9858 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 76.5 | 3e-24 | 123 | 224 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f+k lt sd++++g +++p++ ae+ ++++++ ++l+++d++ ++W++++iyr++++r++lt+GW+ Fv a++Lk+gD+v+F + PDK_30s876481g003 123 FCKNLTASDTSTHGGFSVPRRAAEKLfpqldySMQPPN-QELIVRDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVGAKRLKAGDSVLFI--R 211 89*********************999*****9555555.49************************************************..4 PP SSEE..EEEEE-S CS B3 87 rsefelvvkvfrk 99 +++ +l+++v+r+ PDK_30s876481g003 212 DEKSQLLLGVRRA 224 5677789999997 PP | |||||||
2 | Auxin_resp | 77.6 | 3.2e-26 | 249 | 313 | 1 | 65 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvg 65 aahaa+++s+F+v+YnPra++seF++++ k++ka +++vs+GmRf m+fete+ss+rr+ ++v PDK_30s876481g003 249 AAHAAASRSPFTVYYNPRACPSEFIIPLGKYHKAAYTQVSIGMRFGMMFETEESSKRRCRFIIVE 313 79********************************************************9877765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.11E-46 | 111 | 252 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 9.1E-42 | 116 | 238 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.69E-22 | 122 | 223 | No hit | No description |
Pfam | PF02362 | 6.7E-22 | 123 | 224 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 8.8E-24 | 123 | 225 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.717 | 123 | 225 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.8E-22 | 249 | 316 | IPR010525 | Auxin response factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0009942 | Biological Process | longitudinal axis specification | ||||
GO:0010305 | Biological Process | leaf vascular tissue pattern formation | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0048507 | Biological Process | meristem development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016020 | Cellular Component | membrane | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 356 aa Download sequence Send to blast |
MKLLGEVQSK QAARKVINSE LWHACAGPLA SLPQPGSLVY YFPQGHSEQV TASTRKAANS 60 HIPNYPNLPS QLMCQVHNVT LHADKDTDEI YAQITLQPVN SESDVFPIPD LGHTKSKHPT 120 EFFCKNLTAS DTSTHGGFSV PRRAAEKLFP QLDYSMQPPN QELIVRDLHD NVWTFRHIYR 180 GQPKRHLLTT GWSLFVGAKR LKAGDSVLFI RDEKSQLLLG VRRANRQQTA LPSSVLSADS 240 MHIGVLAAAA HAAASRSPFT VYYNPRACPS EFIIPLGKYH KAAYTQVSIG MRFGMMFETE 300 ESSKRRCRFI IVEWDEHGYG ERPDRVSLWE IETPESLFVF PTPKRQCLPG FVGKFC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 0.0 | 1 | 336 | 37 | 392 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00153 | DAP | Transfer from AT1G19850 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010934525.1 | 0.0 | auxin response factor 11 | ||||
Swissprot | Q01K26 | 0.0 | ARFK_ORYSI; Auxin response factor 11 | ||||
Swissprot | Q8S983 | 0.0 | ARFK_ORYSJ; Auxin response factor 11 | ||||
TrEMBL | M0S1G2 | 0.0 | M0S1G2_MUSAM; Auxin response factor | ||||
STRING | GSMUA_Achr1P20040_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8673 | 32 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19850.1 | 0.0 | ARF family protein |
Publications ? help Back to Top | |||
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