PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s876091g004
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family MYB
Protein Properties Length: 321aa    MW: 36400.4 Da    PI: 9.8521
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s876091g004genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.47.1e-181863147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                       rg W + Ede+l ++v+q+G+ +W++Ia++++ gR++k+c++rw++ 
  PDK_30s876091g004 18 RGHWRPGEDEKLRQLVEQYGPQNWNSIAEKLQ-GRSGKSCRLRWFNQ 63
                       899*****************************.***********996 PP
2Myb_DNA-binding57.53.1e-1871113246
                        SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         ++T+eE+e+l+ a++ +G++ W++I+r ++ gRt++ +k++w+ 
  PDK_30s876091g004  71 RPFTEEEEERLLTAHRIHGNK-WALISRLFP-GRTDNAVKNHWHV 113
                        69*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.2311364IPR017930Myb domain
SMARTSM007172.5E-141766IPR001005SANT/Myb domain
SuperFamilySSF466892.36E-2917111IPR009057Homeodomain-like
PfamPF002494.3E-171863IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-271971IPR009057Homeodomain-like
CDDcd001676.56E-142162No hitNo description
PROSITE profilePS5129426.61465119IPR017930Myb domain
SMARTSM007177.7E-1669117IPR001005SANT/Myb domain
PfamPF002492.1E-1570112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.2E-2172117IPR009057Homeodomain-like
CDDcd001671.44E-781112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MGSSAGAIES DDTKVCPRGH WRPGEDEKLR QLVEQYGPQN WNSIAEKLQG RSGKSCRLRW  60
FNQLDPRINK RPFTEEEEER LLTAHRIHGN KWALISRLFP GRTDNAVKNH WHVIMARRHR  120
ERSRLFGKRS CQDHILSSSD RTANGLFASC SAPQEGSNSN HIQFNACRLF EFGSSTSDRF  180
PASPSSLSLP WAFSGSNISS SRQIFGAQRR NFYSPKYNYD VLQRSHFHDQ SLRPSHHTYR  240
SFNALCDAGY TRVVPHSIRF SGTSDGCGSE VVSASELIRL GDSSARAMNR RTDNNQQDDG  300
DESLKRKHIP FIDFLGVGIS S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C2e-31181184104C-Myb DNA-Binding Domain
1msf_C2e-31181184104C-Myb DNA-Binding Domain
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008795321.10.0transcription factor MYB54-like
TrEMBLA0A2H3Y9660.0A0A2H3Y966_PHODC; transcription factor MYB54-like
STRINGXP_008795321.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29438260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17950.14e-68myb domain protein 52