PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s875851g001

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

FAR1

Protein Properties

Length: 409aa MW: 46055.6 Da PI: 5.9953

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s875851g001	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	72.9	7.1e-23	91	174	5	90
FAR1 5 eYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +Y++++GFsvr+ k+++ +++i +++++Cskeg++++e + +++ ++ trtgCka+++ ++dg+w+vtkl+ eHnH+la PDK_30s875851g001 91 DYGHRMGFSVRRGKQYYWLGTKNIRSKDYYCSKEGFKNDEYPN--ESSYSKLDTRTGCKAMIRFMVDEDGQWKVTKLVDEHNHDLA 174 7************************************9988..99999********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.0E-20	90	174	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 409 aa Download sequence Send to blast
PIAKVAAVTV GFGSAVMDSS EYGGRSCWGS HRLAICMDND GEGEAVCANS DGKEVDKHGE 60 SSDVLKCGEV SKVLLGQVVH SEEEAYSLCC DYGHRMGFSV RRGKQYYWLG TKNIRSKDYY 120 CSKEGFKNDE YPNESSYSKL DTRTGCKAMI RFMVDEDGQW KVTKLVDEHN HDLAKPEERH 180 LLRSMRSPTG AKASVLDSMM NAGIRTINTY SYMVEESDGA ENLAGDLQSL TMNGLIIEEE 240 FEETWGKIIS KYNVQDHEWL NNMYKIREKW CTALNKDTFD GGIKSSQRSE STNNVLNGIA 300 DKSTSLTKFV VAFEKLVNGW RRNESEEDFR CNQSAPTRII KHSEILKHAS KTFTHKIYKL 360 FEKEYLDGCG ATSSSQEISL GGTLYKFELM MQGRGSKVWT VMFDTSTSE

Sequence ? help Back to Top

Protein Sequence Length: 409 aa Download sequence Send to blast

PIAKVAAVTV GFGSAVMDSS EYGGRSCWGS HRLAICMDND GEGEAVCANS DGKEVDKHGE  60
SSDVLKCGEV SKVLLGQVVH SEEEAYSLCC DYGHRMGFSV RRGKQYYWLG TKNIRSKDYY  120
CSKEGFKNDE YPNESSYSKL DTRTGCKAMI RFMVDEDGQW KVTKLVDEHN HDLAKPEERH  180
LLRSMRSPTG AKASVLDSMM NAGIRTINTY SYMVEESDGA ENLAGDLQSL TMNGLIIEEE  240
FEETWGKIIS KYNVQDHEWL NNMYKIREKW CTALNKDTFD GGIKSSQRSE STNNVLNGIA  300
DKSTSLTKFV VAFEKLVNGW RRNESEEDFR CNQSAPTRII KHSEILKHAS KTFTHKIYKL  360
FEKEYLDGCG ATSSSQEISL GGTLYKFELM MQGRGSKVWT VMFDTSTSE

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008787110.1	1e-150	protein FAR1-RELATED SEQUENCE 5-like isoform X1
TrEMBL	A0A2H3XQ20	1e-149	A0A2H3XQ20_PHODC; protein FAR1-RELATED SEQUENCE 5-like isoform X1
STRING	XP_008787110.1	1e-150	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-18	FAR1-related sequence 5