PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s874851g004

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

HD-ZIP

Protein Properties

Length: 774aa MW: 85347.9 Da PI: 5.6617

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s874851g004	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.9	1.9e-19	64	119	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t eq++eLe+lF++ ++p++++r eL+ +l+L+ rqVk+WFqNrR++ k PDK_30s874851g004 64 KKRYHRHTVEQIQELEALFKEYPHPNEKQRLELSIQLSLDPRQVKFWFQNRRTQLK 119 688899**********************************************9987 PP
2	START	32.4	2.1e-11	274	351	1	69
HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCG CS START 1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddk 69 ela++a++elv++a++eep+Wv s e++n+de+ + f++ + + +ea r+s+vv+ ++ lve+l+d + PDK_30s874851g004 274 ELALAAMEELVQMAQLEEPLWVPSLeggkEMLNYDEYHRVFPRIIGvkpigYVSEATRESKVVIINSQVLVETLMDAM 351 5899***********************************998779***************************98 PP
3	START	83	6.8e-27	351	504	94	206
EEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--..-TTSEE-EESSEEEEEEEECTCE...................... CS START 94 mvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.sssvvRaellpSgiliepksngh...................... 161 m aelq+lsplvp R f+Ry++q+ + +w++vdvS+ds+++ p ++ +++lpSg+l++ ++ng+ PDK_30s874851g004 351 MHAELQVLSPLVPiRSINFLRYSKQQAQNVWAVVDVSIDSDKNYPPsPGTYMSSRRLPSGCLVQNMPNGYskyqtwelimklwekviehelk 442 789***********************************9998884556999*********************************** PP .................EEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 162 .................skvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 +vtwveh++++++ +h l+r++++sgla ga wv+ l+r ce+ PDK_30s874851g004 443 ceaklleyllsgsflasNEVTWVEHTEYDESGVHPLYRRMLRSGLALGAGSWVSNLHRRCEC 504 ************889***************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.5E-19	52	115	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.54E-19	53	121	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.54	61	121	IPR001356	Homeobox domain
SMART	SM00389	4.8E-18	62	125	IPR001356	Homeobox domain
CDD	cd00086	5.63E-18	64	121	No hit	No description
Pfam	PF00046	7.0E-17	64	119	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	96	119	IPR017970	Homeobox, conserved site
PROSITE profile	PS50848	23.991	265	507	IPR002913	START domain
CDD	cd08875	1.01E-76	271	503	No hit	No description
SuperFamily	SSF55961	3.96E-18	272	419	No hit	No description
SMART	SM00234	1.6E-8	274	504	IPR002913	START domain
Pfam	PF01852	2.1E-21	351	504	IPR002913	START domain
SuperFamily	SSF55961	3.96E-18	459	504	No hit	No description
SuperFamily	SSF55961	7.22E-16	524	702	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 774 aa Download sequence Send to blast
MEKTNMEGQG EISQLGVIGG EGDGSRDKDS MSRNREDENT SNLETNSLEE ISSDDLDQEN 60 PRKKKRYHRH TVEQIQELEA LFKEYPHPNE KQRLELSIQL SLDPRQVKFW FQNRRTQLKT 120 QIERHENSIL RQDNEKLKSE NMTIREAMMN PRCNTCGGPA ILGEVSLEEQ NMRIENARLK 180 DELNRVSSLA KKFLGRAMSS LDNPVPPTML NSALELAIGN NSFSGLDMIP TLPTMPAFVS 240 GASNPLVSIA TPSARNYGVL GDADKSNERY VLLELALAAM EELVQMAQLE EPLWVPSLEG 300 GKEMLNYDEY HRVFPRIIGV KPIGYVSEAT RESKVVIINS QVLVETLMDA MHAELQVLSP 360 LVPIRSINFL RYSKQQAQNV WAVVDVSIDS DKNYPPSPGT YMSSRRLPSG CLVQNMPNGY 420 SKYQTWELIM KLWEKVIEHE LKCEAKLLEY LLSGSFLASN EVTWVEHTEY DESGVHPLYR 480 RMLRSGLALG AGSWVSNLHR RCECVANLIS SFTTDEHSAI SMAGKRSMMK LARRMTDNFC 540 SGVCAWATHN WRQLTAGTFG EDVRVMTRKS VNNPGEPQGV VLGAATSVPV PVPPQRLFDF 600 LRDGRRRGEW DILSNGGRMH EVLHVAKGHD AANAVSLLRP TVVGASETSM LILQDTFTDA 660 STALVVYAPV DLSAIHVVMN GGDPGYVALL PSGFAILPDG SGSPAATARS GAGEAAASPT 720 GGSLLTAGFQ ILVSSIPTAN PTQDSVETVI NLMSCTIQNI KTAVHCENGV CFGG

Sequence ? help Back to Top

Protein Sequence Length: 774 aa Download sequence Send to blast

MEKTNMEGQG EISQLGVIGG EGDGSRDKDS MSRNREDENT SNLETNSLEE ISSDDLDQEN  60
PRKKKRYHRH TVEQIQELEA LFKEYPHPNE KQRLELSIQL SLDPRQVKFW FQNRRTQLKT  120
QIERHENSIL RQDNEKLKSE NMTIREAMMN PRCNTCGGPA ILGEVSLEEQ NMRIENARLK  180
DELNRVSSLA KKFLGRAMSS LDNPVPPTML NSALELAIGN NSFSGLDMIP TLPTMPAFVS  240
GASNPLVSIA TPSARNYGVL GDADKSNERY VLLELALAAM EELVQMAQLE EPLWVPSLEG  300
GKEMLNYDEY HRVFPRIIGV KPIGYVSEAT RESKVVIINS QVLVETLMDA MHAELQVLSP  360
LVPIRSINFL RYSKQQAQNV WAVVDVSIDS DKNYPPSPGT YMSSRRLPSG CLVQNMPNGY  420
SKYQTWELIM KLWEKVIEHE LKCEAKLLEY LLSGSFLASN EVTWVEHTEY DESGVHPLYR  480
RMLRSGLALG AGSWVSNLHR RCECVANLIS SFTTDEHSAI SMAGKRSMMK LARRMTDNFC  540
SGVCAWATHN WRQLTAGTFG EDVRVMTRKS VNNPGEPQGV VLGAATSVPV PVPPQRLFDF  600
LRDGRRRGEW DILSNGGRMH EVLHVAKGHD AANAVSLLRP TVVGASETSM LILQDTFTDA  660
STALVVYAPV DLSAIHVVMN GGDPGYVALL PSGFAILPDG SGSPAATARS GAGEAAASPT  720
GGSLLTAGFQ ILVSSIPTAN PTQDSVETVI NLMSCTIQNI KTAVHCENGV CFGG

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_026663478.1	0.0	homeobox-leucine zipper protein ROC5-like
Swissprot	Q6EPF0	0.0	ROC5_ORYSJ; Homeobox-leucine zipper protein ROC5
TrEMBL	A0A3Q0I904	0.0	A0A3Q0I904_PHODC; homeobox-leucine zipper protein ROC5-like
STRING	XP_008795401.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1203	37	116

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61150.1	0.0	homeodomain GLABROUS 1

Publications ? help Back to Top
Zou LP, et al. Leaf rolling controlled by the homeodomain leucine zipper class IV gene Roc5 in rice. Plant Physiol., 2011. 156(3): p. 1589-602 [PMID:21596949] Chou IT,Gasser CS Characterization of the cyclophilin gene family of Arabidopsis thaliana and phylogenetic analysis of known cyclophilin proteins. Plant Mol. Biol., 1997. 35(6): p. 873-92 [PMID:9426607]