PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s873901g002
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family bHLH
Protein Properties Length: 316aa    MW: 35319.1 Da    PI: 5.0402
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s873901g002genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.86.3e-11131174755
                        HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        + ErrRR r+++++ eLr+l+P+      +K++K++i   Av Y++ Lq
  PDK_30s873901g002 131 ISERRRRGRMKEKLYELRSLVPNV-----TKMDKMSIIADAVVYVQTLQ 174
                        78*********************8.....8*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.034124173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-14125188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-14126189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.27E-12126176No hitNo description
PfamPF000102.1E-8130174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-12130179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MEDYYLFHTP QTLLIDSIPH DLMDNNAFGT TIANYVHVSG EFLHFGNEYD GDGLHSKSEN  60
MFHGEGEGTS NSGLRIDAVE DSLDVYLSVD GNASASRVVG ESPEEKQGDG NSFKEMTRVA  120
KLRRDRSKTL ISERRRRGRM KEKLYELRSL VPNVTKMDKM SIIADAVVYV QTLQRQAMKL  180
AEEIRLLESS SKVDRLSGFP FENTMKASQV DQGRSIPGGG KVLQLIAVEV GEGRFYVRLE  240
CSKSEGVPSS LYTAIESLGC FHFESSDISI ASGIFVLTLT LNVRELMEEM NASTLKLWVM  300
RAILKEGFEF DMTAIL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008779846.10.0transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR-like, partial
TrEMBLA0A2H3X8D70.0A0A2H3X8D7_PHODC; transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR-like
STRINGXP_008779846.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55463057
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28160.11e-55FER-like regulator of iron uptake