PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s873251g005 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | MYB_related | ||||||||
Protein Properties | Length: 214aa MW: 24410.4 Da PI: 10.8079 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28.6 | 3.3e-09 | 8 | 54 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46 +WT+ + + a +++ ++ +W+ +ar +g g++++++k ++ PDK_30s873251g005 8 SPWTPKQNKMFETALAKYDKDtpdRWHDVARAVG-GKSAEEVKRHYER 54 58********************************.**********975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 10.493 | 5 | 60 | IPR017884 | SANT domain |
SMART | SM00717 | 1.7E-8 | 6 | 58 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.8E-4 | 8 | 56 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.24E-12 | 8 | 64 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 6.3E-7 | 9 | 54 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.69E-7 | 9 | 56 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MASTSLSSPW TPKQNKMFET ALAKYDKDTP DRWHDVARAV GGKSAEEVKR HYERLVEDIR 60 QIESGHVPFP SYRSSGGRGR WIPRPPWIPS SSKRIKPMVI AMRKIINISL KTVKVKTNSC 120 HVSNQKLTQL RSMIGIFPKP IPPCTTPKIS KLPFHHTQSP FNAKSHTISW HTFSLGMLMT 180 VHFHMILVYD KLISEVKDLS VFIKKSSYQG TSEN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 2e-31 | 1 | 77 | 1 | 78 | RADIALIS |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP270 | 38 | 230 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75250.1 | 1e-33 | RAD-like 6 |