PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s873251g004 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | MYB_related | ||||||||
Protein Properties | Length: 78aa MW: 9049.12 Da PI: 8.9229 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 32.5 | 2e-10 | 15 | 59 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 +WT E +++ +a +++ ++ +W+++a+ +g g++ +++ ++ PDK_30s873251g004 15 SWTLRENKKFEEALAKYDKEtpdRWHKVAQAVG-GKSVDEVRRHYE 59 7******************9*************.**********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.54E-13 | 10 | 66 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 11.716 | 11 | 66 | IPR017884 | SANT domain |
SMART | SM00717 | 3.1E-9 | 12 | 64 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-5 | 13 | 63 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.68E-7 | 15 | 62 | No hit | No description |
Pfam | PF00249 | 7.0E-9 | 15 | 59 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 78 aa Download sequence Send to blast |
MASSSMSLSR TSDSSWTLRE NKKFEEALAK YDKETPDRWH KVAQAVGGKS VDEVRRHYEL 60 LIRDINYIET GRVSIPNY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 1e-26 | 6 | 78 | 1 | 73 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008800711.1 | 5e-52 | protein RADIALIS-like 3 | ||||
Swissprot | Q1A173 | 2e-30 | RADL6_ARATH; Protein RADIALIS-like 6 | ||||
TrEMBL | A0A2H3YLV7 | 1e-50 | A0A2H3YLV7_PHODC; protein RADIALIS-like 3 | ||||
STRING | XP_008800711.1 | 2e-51 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP270 | 38 | 230 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75250.2 | 5e-30 | RAD-like 6 |