PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s873251g003
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family MYB_related
Protein Properties Length: 95aa    MW: 10687.9 Da    PI: 9.5547
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s873251g003genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.61e-111559345
                       SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
    Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                       +WT  E +l+ +a +++ ++   +W+++a+ +g g+t++++k ++ 
  PDK_30s873251g003 15 SWTLKENKLFEQALAKYDKEtpdRWHKVAQAVG-GKTPEEVKRHYE 59
                       7******************9*************.**********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.71E-141066IPR009057Homeodomain-like
PROSITE profilePS5129312.141166IPR017884SANT domain
SMARTSM007173.7E-101264IPR001005SANT/Myb domain
PfamPF002498.3E-101559IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-61568IPR009057Homeodomain-like
CDDcd001671.66E-81662No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 95 aa     Download sequence    Send to blast
MASSSLRSSG SSNSSWTLKE NKLFEQALAK YDKETPDRWH KVAQAVGGKT PEEVKRHYEL  60
LVEDIKHIEA GHVPFPNYGS SSSMGGRRVA REEQR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A4e-32681176RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008800712.12e-65protein RADIALIS-like 3
SwissprotF4JVB81e-34RADL1_ARATH; Protein RADIALIS-like 1
TrEMBLA0A2H3YMH85e-64A0A2H3YMH8_PHODC; protein RADIALIS-like 3
STRINGXP_008800712.19e-65(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27038230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.18e-37RAD-like 1
Publications ? help Back to Top
  1. Zhang M, et al.
    ROOT HAIR DEFECTIVE3 family of dynamin-like GTPases mediates homotypic endoplasmic reticulum fusion and is essential for Arabidopsis development.
    Plant Physiol., 2013. 163(2): p. 713-20
    [PMID:23922269]