PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s872941g001

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

NF-YC

Protein Properties

Length: 141aa MW: 15843.3 Da PI: 5.6925

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s872941g001	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	170.4	2.1e-53	3	96	9	102
NF-YC 9 qiekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprde 100 +ie+a+dfknh+lPlarikki+kadedv+misaeaPv+++kace+fileltlrsw+h+eenkrrtl+k+diaaa++rtdifdflvdivprde PDK_30s872941g001 3 EIEHANDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWMHTEENKRRTLQKNDIAAAISRTDIFDFLVDIVPRDE 94 689****************************************************************************************9 PP NF-YC 101 lk 102 lk PDK_30s872941g001 95 LK 96 75 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	4.84E-32	2	86	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	2.7E-38	6	78	IPR009072	Histone-fold
Pfam	PF00808	7.9E-22	14	77	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 141 aa Download sequence Send to blast
MLEIEHANDF KNHSLPLARI KKIMKADEDV RMISAEAPVI FAKACEMFIL ELTLRSWMHT 60 EENKRRTLQK NDIAAAISRT DIFDFLVDIV PRDELKEEGF GIARAGLPAI GGPANTMPYY 120 YVPQQQQITG AGGYSMVLGQ C

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	7e-57	3	92	6	95	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	64	70	RRTLQKN

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of flowering time under long day (LD) conditions. Functions as repressor of flowering, independently of HD1 and GHD7. Controls flowering time by negatively regulating the expression of EHD1 and HD3A (PubMed:26542958). Component of the NF-Y/HAP transcription factor complex (By similarity). {ECO:0000250, ECO:0000269\|PubMed:26542958}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation under long day (LD) conditions. Expression increases in the middle of daytime, peaks around the end of the light period and gradually decreases during the dark period and beginning of daylight. {ECO:0000269\|PubMed:26542958}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF500546	0.0	KF500546.1 Elaeis guineensis nuclear transcription factor Y subunit C-2 (NTF) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001306836.1	1e-93	nuclear transcription factor Y subunit C-2-like
Swissprot	Q655V5	4e-76	NFYC4_ORYSJ; Nuclear transcription factor Y subunit C-4
TrEMBL	A0A060ID37	3e-92	A0A060ID37_ELAGV; Nuclear transcription factor Y subunit C-2
STRING	XP_008807972.1	2e-95	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2703	37	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G56170.2	5e-73	nuclear factor Y, subunit C2

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Kim SK, et al. OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions in rice. Planta, 2016. 243(3): p. 563-76 [PMID:26542958]