PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PDK_30s870931g002 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 235aa MW: 27553.8 Da PI: 8.8337 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 60.7 | 3.2e-19 | 4 | 49 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W +eEde+l ++v+++G+++W++Ia++++ gR++k+c++rw++ PDK_30s870931g002 4 RGHWRPEEDEKLRELVARYGPHNWNAIAEKLQ-GRSGKSCRLRWFNQ 49 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 54.9 | 2e-17 | 56 | 99 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r ++T+eE+e+l+ ++ +G++ W+ Iar ++ gRt++ +k++w+ PDK_30s870931g002 56 RSPFTPEEEERLLASHRIHGNR-WAIIARLFP-GRTDNAVKNHWHV 99 789*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 27.163 | 1 | 54 | IPR017930 | Myb domain |
SMART | SM00717 | 3.6E-16 | 3 | 52 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.9E-19 | 4 | 49 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.43E-30 | 4 | 97 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.5E-28 | 5 | 57 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.23E-14 | 7 | 48 | No hit | No description |
SMART | SM00717 | 4.4E-15 | 55 | 103 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 21.107 | 55 | 105 | IPR017930 | Myb domain |
Pfam | PF00249 | 3.4E-14 | 56 | 98 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.0E-21 | 58 | 104 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.22E-10 | 58 | 98 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 235 aa Download sequence Send to blast |
MCTRGHWRPE EDEKLRELVA RYGPHNWNAI AEKLQGRSGK SCRLRWFNQL DPRINRSPFT 60 PEEEERLLAS HRIHGNRWAI IARLFPGRTD NAVKNHWHVI MARRCRERSR LYSKRSYRSA 120 IKDEKPKQGK ERKSESRNIV ALIEKYYRGC GDSVANNHQD QKEFYSQIHG YYPHMVADGD 180 RERENSIEFY DFLQVNTDSI DTKCCSSIEE QEETKESCSK AGVPFIDFLA VGSSS |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-33 | 2 | 105 | 5 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that confers sensitivity to abscisic acid (ABA) and salt, but tolerance to drought (PubMed:21399993). Regulates secondary cell wall (SCW) biosynthesis, especially in interfascicular and xylary fibers (PubMed:18952777, PubMed:23781226). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:21399993, ECO:0000269|PubMed:23781226}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00145 | DAP | Transfer from AT1G17950 | Download |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (PubMed:16463103, PubMed:21399993). Accumulates in response to salt (PubMed:21399993). Triggered by MYB46 and MYB83 in the regulation of secondary cell wall biosynthesis (PubMed:19674407, PubMed:22197883). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19674407, ECO:0000269|PubMed:21399993, ECO:0000269|PubMed:22197883}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010911701.1 | 1e-164 | transcription factor MYB52 | ||||
Swissprot | Q6R0C4 | 9e-80 | MYB52_ARATH; Transcription factor MYB52 | ||||
TrEMBL | A0A2H3XSC2 | 1e-149 | A0A2H3XSC2_PHODC; transcription factor MYB54-like isoform X2 | ||||
STRING | XP_008787882.1 | 1e-149 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP294 | 38 | 260 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G17950.1 | 4e-77 | myb domain protein 52 |
Publications ? help Back to Top | |||
---|---|---|---|
|