PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s870931g002
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family MYB
Protein Properties Length: 235aa    MW: 27553.8 Da    PI: 8.8337
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s870931g002genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.73.2e-19449147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                       rg W +eEde+l ++v+++G+++W++Ia++++ gR++k+c++rw++ 
  PDK_30s870931g002  4 RGHWRPEEDEKLRELVARYGPHNWNAIAEKLQ-GRSGKSCRLRWFNQ 49
                       899*****************************.***********996 PP

2Myb_DNA-binding54.92e-175699146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                       r ++T+eE+e+l+  ++ +G++ W+ Iar ++ gRt++ +k++w+ 
  PDK_30s870931g002 56 RSPFTPEEEERLLASHRIHGNR-WAIIARLFP-GRTDNAVKNHWHV 99
                       789*******************.*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129427.163154IPR017930Myb domain
SMARTSM007173.6E-16352IPR001005SANT/Myb domain
PfamPF002496.9E-19449IPR001005SANT/Myb domain
SuperFamilySSF466892.43E-30497IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.5E-28557IPR009057Homeodomain-like
CDDcd001676.23E-14748No hitNo description
SMARTSM007174.4E-1555103IPR001005SANT/Myb domain
PROSITE profilePS5129421.10755105IPR017930Myb domain
PfamPF002493.4E-145698IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.0E-2158104IPR009057Homeodomain-like
CDDcd001671.22E-105898No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MCTRGHWRPE EDEKLRELVA RYGPHNWNAI AEKLQGRSGK SCRLRWFNQL DPRINRSPFT  60
PEEEERLLAS HRIHGNRWAI IARLFPGRTD NAVKNHWHVI MARRCRERSR LYSKRSYRSA  120
IKDEKPKQGK ERKSESRNIV ALIEKYYRGC GDSVANNHQD QKEFYSQIHG YYPHMVADGD  180
RERENSIEFY DFLQVNTDSI DTKCCSSIEE QEETKESCSK AGVPFIDFLA VGSSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-3321055108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that confers sensitivity to abscisic acid (ABA) and salt, but tolerance to drought (PubMed:21399993). Regulates secondary cell wall (SCW) biosynthesis, especially in interfascicular and xylary fibers (PubMed:18952777, PubMed:23781226). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:21399993, ECO:0000269|PubMed:23781226}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00145DAPTransfer from AT1G17950Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (PubMed:16463103, PubMed:21399993). Accumulates in response to salt (PubMed:21399993). Triggered by MYB46 and MYB83 in the regulation of secondary cell wall biosynthesis (PubMed:19674407, PubMed:22197883). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19674407, ECO:0000269|PubMed:21399993, ECO:0000269|PubMed:22197883}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010911701.11e-164transcription factor MYB52
SwissprotQ6R0C49e-80MYB52_ARATH; Transcription factor MYB52
TrEMBLA0A2H3XSC21e-149A0A2H3XSC2_PHODC; transcription factor MYB54-like isoform X2
STRINGXP_008787882.11e-149(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29438260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17950.14e-77myb domain protein 52
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Cassan-Wang H, et al.
    Identification of novel transcription factors regulating secondary cell wall formation in Arabidopsis.
    Front Plant Sci, 2013. 4: p. 189
    [PMID:23781226]
  3. Shi D, et al.
    MYB52 Negatively Regulates Pectin Demethylesterification in Seed Coat Mucilage.
    Plant Physiol., 2018. 176(4): p. 2737-2749
    [PMID:29440562]