PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s870811g010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | MYB | ||||||||
Protein Properties | Length: 316aa MW: 36210.4 Da PI: 6.7519 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.4 | 5e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l++ ++++G g+W++++r g+ R++k+c++rw +yl PDK_30s870811g010 14 KGLWSPEEDEKLYNHIARFGIGCWSSVPRQAGLERCGKSCRLRWINYL 61 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 48.2 | 2.6e-15 | 67 | 110 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++T++E++l+ +++ lG++ W+ Ia+ ++ gRt++++k++w++ PDK_30s870811g010 67 RGNFTQQEEDLITSLHEVLGNR-WSQIAAQLP-GRTDNEIKNFWNS 110 89********************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.5E-25 | 6 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 23.084 | 9 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.44E-29 | 12 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.7E-12 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-13 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.28E-10 | 17 | 61 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.7E-25 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.6E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 17.761 | 66 | 116 | IPR017930 | Myb domain |
Pfam | PF00249 | 1.1E-13 | 67 | 110 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.62E-9 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 316 aa Download sequence Send to blast |
MGRHPHCTKQ KLRKGLWSPE EDEKLYNHIA RFGIGCWSSV PRQAGLERCG KSCRLRWINY 60 LRPDLKRGNF TQQEEDLITS LHEVLGNRWS QIAAQLPGRT DNEIKNFWNS SLKKMLKQRG 120 IDPITHKPLR ETGAQEERQK PSMKPIFGPF ASFECQAVID RVETGANFYR QFRQTCRPLE 180 QNEFMMNFDC SFTSGPNSVY CDYGEALDNS DSCGIQESLN NGSNWNCNIP AQTSTVLGNE 240 VFNWYSSGIK LESPIRTEFK TYERRLNPCQ GLQHVDSSEE FSSYPTTSRS QDLSDAWFDV 300 SQGELACELN GNFLSS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-27 | 12 | 116 | 5 | 108 | B-MYB |
1h8a_C | 5e-27 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_026659090.1 | 0.0 | myb-related protein Hv33-like | ||||
TrEMBL | A0A3Q0I0D1 | 0.0 | A0A3Q0I0D1_PHODC; myb-related protein Hv33-like | ||||
STRING | XP_008784966.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2327 | 33 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01680.3 | 3e-74 | myb domain protein 55 |