PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s870691g002
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family HD-ZIP
Protein Properties Length: 701aa    MW: 77271.2 Da    PI: 7.044
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s870691g002genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.85.2e-201671156
                       TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
           Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                       +++ +++t+ q+++Le++F+++++p++++r +L++ l L+ rq+k+WFqNrR+++k
  PDK_30s870691g002 16 KKRYHRHTPRQIQQLEAMFKECPHPDEKQRMQLSRDLALEPRQIKFWFQNRRTQMK 71
                       688999***********************************************998 PP
2START1655.5e-522074373206
                        HHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGG......CT-TT-S. CS
              START   3 aeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddke......qWdetla. 77 
                        a  a++el+++++ +ep+W+k      e++n +++ ++f++ +        ++ea+r+sg+v+m+++ lv  ++d++       +W e ++ 
  PDK_30s870691g002 207 ATNAMEELIRLVQTDEPLWTKPGgdgrEILNLETYDRIFPKLRHqfkspdIRTEASRDSGLVFMNAVALVDLFMDSRDsfslqsKWAEFFPt 298
                        5679*****************999999999999999999987778899999****************99999999998************** PP

                        ...EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECT CS
              START  78 ...kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksn 159
                           ka tlev+  g      g l lm+ e q+lsp+vp R+f+f+Ry++q+++g w+i+dvSvd  ++++  +++  +++lpSg+li++++ 
  PDK_30s870691g002 299 ivsKARTLEVLAGGmagsrsGSLLLMYEEIQVLSPVVPtREFYFLRYCQQMEQGLWAIADVSVDLSRENQFVPPF-GSRRLPSGCLIQDMPS 389
                        ******************************************************************999864444.4589************ PP

                        CEEEEEEEE-EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
              START 160 ghskvtwvehvdlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206
                        g+skvtwveh++ ++++p h l+r lv+sg+a+ga++w+atlqr ce+
  PDK_30s870691g002 390 GYSKVTWVEHMEIEEKTPvHRLYRDLVSSGAAFGAQRWLATLQRMCER 437
                        **********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.09E-19673IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.6E-221078IPR009057Homeodomain-like
PROSITE profilePS5007117.6211373IPR001356Homeobox domain
SMARTSM003892.0E-171477IPR001356Homeobox domain
PfamPF000461.5E-171671IPR001356Homeobox domain
CDDcd000861.10E-171674No hitNo description
PROSITE patternPS0002704871IPR017970Homeobox, conserved site
PROSITE profilePS5084850.993196440IPR002913START domain
SuperFamilySSF559611.65E-32197438No hitNo description
CDDcd088754.31E-119200436No hitNo description
SMARTSM002344.4E-40205437IPR002913START domain
PfamPF018522.7E-44207437IPR002913START domain
Gene3DG3DSA:3.30.530.207.7E-5318434IPR023393START-like domain
SuperFamilySSF559613.98E-20458665No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009828Biological Processplant-type cell wall loosening
GO:0010091Biological Processtrichome branching
GO:0005634Cellular Componentnucleus
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 701 aa     Download sequence    Send to blast
MDSGDDPDAS DGQRKKKRYH RHTPRQIQQL EAMFKECPHP DEKQRMQLSR DLALEPRQIK  60
FWFQNRRTQM KAQHERADNC ALRAENDKIR CENIAMREAL KNVICPTCGG DSYFDEQKLR  120
LENARLKEEL DRVSSMASKY LGRPVTQLPP VQPVPISSLD LSVGGFGNLA LGPSLDLDLL  180
TGSSSALPFP FSTAVSDIEK PIMADMATNA MEELIRLVQT DEPLWTKPGG DGREILNLET  240
YDRIFPKLRH QFKSPDIRTE ASRDSGLVFM NAVALVDLFM DSRDSFSLQS KWAEFFPTIV  300
SKARTLEVLA GGMAGSRSGS LLLMYEEIQV LSPVVPTREF YFLRYCQQME QGLWAIADVS  360
VDLSRENQFV PPFGSRRLPS GCLIQDMPSG YSKVTWVEHM EIEEKTPVHR LYRDLVSSGA  420
AFGAQRWLAT LQRMCERFAC LMAAGTSSRD LGGVIPSPEG KRSMMKLSQR MINNFCYSLS  480
ASTGNRWTTL SGLNDVGVRV TVHKSTNPGQ PNGVVLSAAT SIWLPISSER VFSFFKDERT  540
RAQWDVLSSG NSVQEVACVI NGSHPGNCIS LLRALNASQN NMLILQESCT DASGSLVIYA  600
PIDLPSINIV MSGEDPSYIP LLPSGFTILP DGRAGGGGGA TTSSNPMGGS SGSLITVAFQ  660
ILASEALPHN PPTTTLNCNI PDGLRGLLIK GKVVRVLTSV H
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00232DAPTransfer from AT1G73360Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008806630.10.0homeobox-leucine zipper protein ROC8-like
SwissprotQ69T580.0ROC8_ORYSJ; Homeobox-leucine zipper protein ROC8
TrEMBLA0A2H3Z1010.0A0A2H3Z101_PHODC; homeobox-leucine zipper protein ROC8-like
STRINGXP_008806630.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29123770
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.10.0homeodomain GLABROUS 11