PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s869221g004

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

NAC

Protein Properties

Length: 283aa MW: 31581.4 Da PI: 8.5515

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s869221g004	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	105.9	4.9e-33	51	191	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......lelee.vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk..... 79 lp+G++F+Ptd+e++ e+L+ k++ ++ ++++ +i+ +i++++P++Lp v+ + +fF++ +k+y+tg+rk+r+++ PDK_30s869221g004 51 LPAGVKFDPTDQEIL-EHLEGKARPDSqklhplIDEFIpTIEGEnGICYTHPEKLP-GVSRDGLIRHFFHRPSKAYTTGTRKRRKVHtdahg 140 799*********9.99998885565443332233665557******.555555677**************74444555 PP NAM 80 .sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tgk+++vl+ +g+l+g kk+Lv+y g+++k+ekt+Wvmh+y+l PDK_30s869221g004 141 gETRWHKTGKTRPVLV-GGKLMGYKKILVLYtnYGKQRKPEKTNWVMHQYHL 191 5778********.**********6657999999*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.01E-38	43	210	IPR003441	NAC domain
PROSITE profile	PS51005	33.892	51	210	IPR003441	NAC domain
Pfam	PF02365	4.9E-15	52	191	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 283 aa Download sequence Send to blast
MTWCNSCDDD RANDRSSTSY ANVIKTCPSC GHRIQYEEQA AAAAIQDLPG LPAGVKFDPT 60 DQEILEHLEG KARPDSQKLH PLIDEFIPTI EGENGICYTH PEKLPGVSRD GLIRHFFHRP 120 SKAYTTGTRK RRKVHTDAHG GETRWHKTGK TRPVLVGGKL MGYKKILVLY TNYGKQRKPE 180 KTNWVMHQYH LGSDEEEKDG ELVVSKVFYQ TQPRQCGSVA KDAVQGKSKG LNGDDHPILK 240 DASIVDYYNS SLITYNQGGH NRASSPHLIP NFAVHSGGTS YLP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269\|PubMed:18952777, ECO:0000269\|PubMed:22133261}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008789978.1	0.0	NAC domain-containing protein 73-like
Swissprot	O49459	1e-121	NAC73_ARATH; NAC domain-containing protein 73
TrEMBL	A0A2H3XX35	0.0	A0A2H3XX35_PHODC; NAC domain-containing protein 73-like
STRING	XP_008789978.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3075	37	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28500.1	1e-122	NAC domain containing protein 73

Publications ? help Back to Top
Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE CressExpress: a tool for large-scale mining of expression data from Arabidopsis. Plant Physiol., 2008. 147(3): p. 1004-16 [PMID:18467456] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195] Jervis J, et al. A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood. Phytochemistry, 2015. 115: p. 112-20 [PMID:25771508]