PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s868931g002 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | NF-YA | ||||||||
Protein Properties | Length: 152aa MW: 16181.9 Da PI: 8.3295 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 41.4 | 4.6e-13 | 16 | 37 | 37 | 58 |
CBFB_NFYA 37 pylheSRhkhAlrRpRgsgGrF 58 pylheSRh hA+rR+Rg+gGrF PDK_30s868931g002 16 PYLHESRHLHAMRRARGCGGRF 37 9********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51152 | 18.091 | 1 | 40 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 2.9E-10 | 16 | 37 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 152 aa Download sequence Send to blast |
FMVIDNYDYT STILLPYLHE SRHLHAMRRA RGCGGRFLNT KKAEASASIA NPENGGNAGA 60 SLPTQSASSS ASQVLPSGCP GSNTNEIKRP VVQGICEAQA YANGNDGYQQ QSGFQLSFHS 120 KSGERVEEGD CSGQQRGGIL VNRPPNRAVA IQ |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008790783.1 | 2e-94 | nuclear transcription factor Y subunit A-1 | ||||
Refseq | XP_008790792.1 | 2e-94 | nuclear transcription factor Y subunit A-1 | ||||
Refseq | XP_026660955.1 | 2e-94 | nuclear transcription factor Y subunit A-1 | ||||
TrEMBL | A0A2H3XYY8 | 5e-93 | A0A2H3XYY8_PHODC; nuclear transcription factor Y subunit A-1 | ||||
STRING | XP_008790783.1 | 8e-94 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP27498 | 4 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30500.2 | 4e-13 | nuclear factor Y, subunit A7 |